CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30940	Soybean	nucleus	85.44	86.1
Bra023579.1-P	Field mustard	cytosol	52.87	75.41
CDX85490	Canola	mitochondrion	63.22	64.2
CDX69428	Canola	plastid	63.6	62.41
AT5G16710.1	Thale cress	plastid	61.69	62.4
KRG92962	Soybean	mitochondrion	50.19	61.5
PGSC0003DMT400040588	Potato	cytosol, plastid	62.84	61.19
KRH36212	Soybean	cytosol, mitochondrion, nucleus	49.81	61.03
KXG19661	Sorghum	plastid	60.92	60.69
Solyc11g011250.1.1	Tomato	plastid	62.07	60.45
Os06t0232600-01	Rice	extracellular, plasma membrane	61.69	59.19
Zm00001d037240_P001	Maize	plastid	60.15	58.36
TraesCS7D01G191700.1	Wheat	plastid	57.47	57.03
TraesCS7B01G095600.2	Wheat	plastid	57.09	56.65
TraesCS7A01G190700.1	Wheat	plastid	56.7	56.27
VIT_14s0006g00630.t01	Wine grape	plastid	59.39	53.63
GSMUA_Achr7P18780_001	Banana	mitochondrion	64.75	52.16
HORVU7Hr1G038770.22	Barley	mitochondrion	57.85	47.04
CDY10902	Canola	mitochondrion	31.8	43.23
CDY33899	Canola	cytosol, mitochondrion, plastid	14.94	19.02
Bra020633.1-P	Field mustard	cytosol, mitochondrion	16.86	12.57

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	EntrezGene:732557	EMBL:ACUP02010826	EMBL:BT096847
UniProt:C6TGU0	EnsemblPlantsGene:GLYMA_18G040100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	EMBL:KM818412	EnsemblPlants:KRG97934	ProteinID:KRG97934
ProteinID:KRG97934.1	PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF1
SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	UniParc:UPI0001B16CC2	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:3311512..3316969

Molecular Weight (calculated)

29045.9 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.281

Length

261 amino acids

Sequence
(BLAST)

001: MSAVRVQVSA CAVSATVNHL RLRQNAVVSF RKKKPLTLRV VSMSSVPPSQ PFEIAVKASV TTPNRLGDCP FCQRVLLTLE EKHLPYDPKL VDLTNKPEWF
101: LKVNPDGKVP VIKFDEKWVP DSDVITQTLE EKYPSPPLVT PPERATAGSK IFSTFIGFLK SKDPNDGTEQ ALLSELSSFN DYIKENGPFI NGSEISAADL
201: SLGPKLYHLE IALGHYKKWT VPDSLTSLKS YMKAIFSRES FVKTSAQPQD VIEGWRPKVE G

Best Arabidopsis Sequence Match ( AT5G16710.1 )
(BLAST)

001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG

Arabidopsis Description

DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.