Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G191700.1 | Wheat | plastid | 98.48 | 98.48 |
| TraesCS7B01G095600.2 | Wheat | plastid | 97.72 | 97.72 |
| KXG19661 | Sorghum | plastid | 80.61 | 80.92 |
| HORVU7Hr1G038770.22 | Barley | mitochondrion | 96.96 | 79.44 |
| Zm00001d037240_P001 | Maize | plastid | 79.85 | 78.07 |
| Os06t0232600-01 | Rice | extracellular, plasma membrane | 74.14 | 71.69 |
| Bra023579.1-P | Field mustard | cytosol | 47.53 | 68.31 |
| AT5G16710.1 | Thale cress | plastid | 61.98 | 63.18 |
| PGSC0003DMT400040588 | Potato | cytosol, plastid | 60.08 | 58.96 |
| CDX85490 | Canola | mitochondrion | 57.41 | 58.75 |
| CDX69428 | Canola | plastid | 58.56 | 57.89 |
| KRH30940 | Soybean | nucleus | 56.65 | 57.53 |
| Solyc11g011250.1.1 | Tomato | plastid | 58.56 | 57.46 |
| KRG97934 | Soybean | nucleus | 56.27 | 56.7 |
| GSMUA_Achr7P18780_001 | Banana | mitochondrion | 66.16 | 53.7 |
| VIT_14s0006g00630.t01 | Wine grape | plastid | 53.23 | 48.44 |
| TraesCS1A01G045700.1 | Wheat | golgi | 49.05 | 41.48 |
| CDY10902 | Canola | mitochondrion | 27.0 | 36.98 |
| CDY33899 | Canola | cytosol, mitochondrion, plastid | 14.07 | 18.05 |
| Bra020633.1-P | Field mustard | cytosol, mitochondrion | 17.11 | 12.86 |
Protein Annotations
| Gene3D:1.20.1050.10 | MapMan:10.4.1.3 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:Glutathione-S-Trfase_C-like | InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:IPR010987 | PFAM:PF13410 |
| PFAM:PF13417 | PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR44420 | PANTHER:PTHR44420:SF1 | SUPFAM:SSF47616 |
| SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | EnsemblPlantsGene:TraesCS7A01G190700 | EnsemblPlants:TraesCS7A01G190700.1 | TIGR:cd00570 | TIGR:cd03201 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:148479968..148494477
Molecular Weight (calculated)
28884.7 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.149
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLLRTTTC ATATTAGSSS TLLATTFRRG RRLLPARASP PRRAFTARAS AEPLEVCAKA SITVPDRLGD CPFTQRVLLT IEEKNLPYEL KLVDLANKPD
101: WLFTINPEGK VPIVKLEDKW IADSDVITQV LEEKYPQPSL ATPPEKASIG SKIFSTFVGF LKSKDTNDGT EQTLLSELTS FDSYLKDNGP FINGGTISAA
201: DLSLAPKLYH MEIALGHYKN WSVPDALAHV KTYMKTIFSM DSFVNTRGLP EDVIAGWRSK VMG
101: WLFTINPEGK VPIVKLEDKW IADSDVITQV LEEKYPQPSL ATPPEKASIG SKIFSTFVGF LKSKDTNDGT EQTLLSELTS FDSYLKDNGP FINGGTISAA
201: DLSLAPKLYH MEIALGHYKN WSVPDALAHV KTYMKTIFSM DSFVNTRGLP EDVIAGWRSK VMG
001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG
Arabidopsis Description
DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.