Factsheet for TraesCS7B01G095600.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS7A01G562100.1
TraesCS7D01G001000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16710.1	TraesCS1A01G325600.1	AT5G42980.1	15352244
AT5G16710.1	TraesCS1B01G338800.1	AT5G42980.1	15352244
AT5G16710.1	TraesCS1B01G339000.1	AT5G42980.1	15352244
AT5G16710.1	TraesCS1D01G327500.1	AT5G42980.1	15352244
AT5G16710.1	TraesCS7A01G562100.1	AT5G42980.1	15352244
AT5G16710.1	TraesCS7D01G001000.1	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G191700.1	Wheat	plastid	97.72	97.72
TraesCS7A01G190700.1	Wheat	plastid	97.72	97.72
KXG19661	Sorghum	plastid	79.85	80.15
HORVU7Hr1G038770.22	Barley	mitochondrion	96.2	78.82
Zm00001d037240_P001	Maize	plastid	79.09	77.32
Os06t0232600-01	Rice	extracellular, plasma membrane	73.38	70.96
Bra023579.1-P	Field mustard	cytosol	48.29	69.4
AT5G16710.1	Thale cress	plastid	61.6	62.79
CDX85490	Canola	mitochondrion	57.79	59.14
CDX69428	Canola	plastid	58.94	58.27
PGSC0003DMT400040588	Potato	cytosol, plastid	59.32	58.21
KRH30940	Soybean	nucleus	57.03	57.92
KRG97934	Soybean	nucleus	56.65	57.09
Solyc11g011250.1.1	Tomato	plastid	57.79	56.72
GSMUA_Achr7P18780_001	Banana	mitochondrion	66.16	53.7
TraesCS1B01G059100.1	Wheat	cytosol	45.25	49.58
VIT_14s0006g00630.t01	Wine grape	plastid	52.47	47.75
CDY10902	Canola	mitochondrion	27.76	38.02
CDY33899	Canola	cytosol, mitochondrion, plastid	13.69	17.56
Bra020633.1-P	Field mustard	cytosol, mitochondrion	16.35	12.29

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF13410
PFAM:PF13417	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF1	SUPFAM:SSF47616
SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS7B01G095600	EnsemblPlants:TraesCS7B01G095600.2	TIGR:cd00570	TIGR:cd03201
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:109936366..109941354

Molecular Weight (calculated)

28865.7 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.119

Length

263 amino acids

Sequence
(BLAST)

001: MAVLLRTTTC ATAATAGSSS TLLATTFRRG RRLLPARASP PRRAFTARAS AEPLEVCAKV SITVPDRLGD CPFTQRVLLT IEEKNLPYEL KLVDLANKPD
101: WLFTINPEGK VPIVKLEDKW VADSDVITQV LEEKYPQPSL ATPPEKASIG SKIFSTFIGF LKSKDTNDGT EQTLLSELTS FDSYLKDNGP FINGGTISAA
201: DLSLAPKLYH MEIALGHYKN WSVPDALAHV KTYMETIFSM DSFVNTRGLP EDVIAGWRSK VIG

Best Arabidopsis Sequence Match ( AT5G16710.1 )
(BLAST)

001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG

Arabidopsis Description

DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.