CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16710.1	CDY32970	AT5G42980.1	15352244
AT5G16710.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G16710.1	Thale cress	plastid	85.34	87.98
CDX85490	Canola	mitochondrion	76.69	79.38
PGSC0003DMT400040588	Potato	cytosol, plastid	64.29	63.81
KRG97934	Soybean	nucleus	62.41	63.6
Solyc11g011250.1.1	Tomato	plastid	63.53	63.06
KRH30940	Soybean	nucleus	61.28	62.93
Os06t0232600-01	Rice	extracellular, plasma membrane	63.53	62.13
CDY29420	Canola	cytosol	49.25	61.5
CDY39369	Canola	cytosol	49.25	61.5
KXG19661	Sorghum	plastid	59.77	60.69
CDY62535	Canola	cytosol	48.5	60.28
Zm00001d037240_P001	Maize	plastid	60.9	60.22
CDX83759	Canola	cytosol	43.61	60.1
CDX96659	Canola	cytosol	42.48	59.79
CDY37249	Canola	cytosol	47.74	59.35
TraesCS7B01G095600.2	Wheat	plastid	58.27	58.94
TraesCS7D01G191700.1	Wheat	plastid	58.27	58.94
TraesCS7A01G190700.1	Wheat	plastid	57.89	58.56
VIT_14s0006g00630.t01	Wine grape	plastid	56.02	51.56
CDY10902	Canola	mitochondrion	36.84	51.04
GSMUA_Achr7P18780_001	Banana	mitochondrion	59.4	48.77
HORVU7Hr1G038770.22	Barley	mitochondrion	58.65	48.6
CDY37653	Canola	cytosol	10.53	45.9
CDY65006	Canola	extracellular	10.53	43.08
CDY33899	Canola	cytosol, mitochondrion, plastid	25.94	33.66

Protein Annotations

Gene3D:1.20.1050.10	MapMan:10.4.1.3	Gene3D:3.40.30.10	EnsemblPlants:CDX69428	ProteinID:CDX69428	ProteinID:CDX69428.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00135397001	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	PFAM:PF13410	PFAM:PF13417	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR44420	PANTHER:PTHR44420:SF1	SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf
UniParc:UPI0004EF016D	:	:	:	:	:

Description

BnaA10g17770D

Coordinates

chrLK031790:-:180795..182534

Molecular Weight (calculated)

29640.9 Da

IEP (calculated)

9.278

GRAVY (calculated)

-0.329

Length

266 amino acids

Sequence
(BLAST)

001: MISLRFQPST AGVLSAPVGR AGLIKRFGLT KPRRTVRLGT VAMAAAPLEI CVKASITTPN KLGDCPFCQR VLLTMEEKHV PYDMKMVDLS NKPEWFLKIS
101: AEGKVPVVKF DEKWVPDSDV ITQALEDKYP EPPLATPPEK ASVGSKIFST FIGFLKSKDP KDGTKSKDPK DRTEQVLLDE LSTFNDYLKE NGPYINGEKI
201: SAADLSLAPK LYHMKIALGH FKNWSVPDSL PFLKSYMENV FSRESFKNTE AQSEDVIAGW RPKVMG

Best Arabidopsis Sequence Match ( AT5G16710.1 )
(BLAST)

001: MISLRFQPST TAGVLSASVS RAGFIKRCGS TKPGRVGRFV TMATAASPLE ICVKASITTP NKLGDCPFCQ KVLLTMEEKN VPYDMKMVDL SNKPEWFLKI
101: SPEGKVPVVK FDEKWVPDSD VITQALEEKY PEPPLATPPE KASVGSKIFS TFVGFLKSKD SGDGTEQVLL DELTTFNDYI KDNGPFINGE KISAADLSLA
201: PKLYHMKIAL GHYKNWSVPD SLPFVKSYME NVFSRESFTN TRAETEDVIA GWRPKVMG

Arabidopsis Description

DHAR3DHAR3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIL9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.