CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0317g00040.t01	Wine grape	vacuole	39.34	58.54
CDX96659	Canola	cytosol	63.93	20.63
CDX83759	Canola	cytosol	63.93	20.21
Solyc05g054760.2.1	Tomato	extracellular	67.21	19.52
PGSC0003DMT400060193	Potato	cytosol	67.21	19.52
KRG92962	Soybean	mitochondrion	63.93	18.31
KRH36212	Soybean	cytosol, mitochondrion, nucleus	63.93	18.31
VIT_00s0317g00050.t01	Wine grape	cytosol	62.3	17.92
CDY39369	Canola	cytosol	62.3	17.84
CDY29420	Canola	cytosol	62.3	17.84
Os05t0116100-01	Rice	extracellular	60.66	17.37
CDY62535	Canola	cytosol	59.02	16.82
CDY37249	Canola	cytosol	57.38	16.36
GSMUA_Achr11P...	Banana	cytosol, unclear	57.38	16.05
EES18912	Sorghum	cytosol	54.1	15.42
Zm00001d035595_P003	Maize	cytosol	54.1	15.35
Zm00001d011034_P004	Maize	cytosol	54.1	15.35
TraesCS1B01G059100.1	Wheat	cytosol	57.38	14.58
GSMUA_Achr6P34340_001	Banana	cytosol	52.46	14.55
GSMUA_Achr11P...	Banana	plastid	63.93	14.08
Zm00001d011035_P001	Maize	endoplasmic reticulum	59.02	13.58
OQU77257	Sorghum	plastid	57.38	12.07
HORVU1Hr1G008120.1	Barley	extracellular	55.74	11.04
TraesCS1A01G045700.1	Wheat	golgi	55.74	10.93
CDX85490	Canola	mitochondrion	45.9	10.89
CDY33899	Canola	cytosol, mitochondrion, plastid	36.07	10.73
CDX69428	Canola	plastid	45.9	10.53
CDY10902	Canola	mitochondrion	27.87	8.85
Solyc06g075520.2.1	Tomato	cytosol	8.2	4.55
Solyc05g013950.1.1	Tomato	plastid	9.84	4.26
Solyc11g039930.1.1	Tomato	cytosol	6.56	4.21
CDY65006	Canola	extracellular	3.28	3.08
Solyc09g056180.2.1	Tomato	cytosol	4.92	2.91

Protein Annotations

EnsemblPlants:CDY37653	EnsemblPlantsGene:GSBRNA2T00064535001	Gene3D:3.40.30.10	PANTHER:PTHR44420	PANTHER:PTHR44420:SF2	ProteinID:CDY37653
ProteinID:CDY37653.1	SEG:seg	UniParc:UPI0004EF496A	UniProt:A0A078HLB4	MapMan:35.2	:

Description

BnaC04g29950DBnaC04g29950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLB4]

Coordinates

chrLK032405:+:228475..228660

Molecular Weight (calculated)

6764.2 Da

IEP (calculated)

7.256

GRAVY (calculated)

0.138

Length

61 amino acids

Sequence
(BLAST)

1: MGIEVCVKAA SGAPDVLGDC PFSQRVLLTL EEKTLTRLIS STLHSYPTGS WLLVPRESFR W

Best Arabidopsis Sequence Match ( AT1G19570.1 )
(BLAST)

001: MALEICVKAA VGAPDHLGDC PFSQRALLTL EEKSLTYKIH LINLSDKPQW FLDISPQGKV PVLKIDDKWV TDSDVIVGIL EEKYPDPPLK TPAEFASVGS
101: NIFGTFGTFL KSKDSNDGSE HALLVELEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE
201: KYVISGWAPK VNP

Arabidopsis Description

DHAR1Glutathione S-transferase DHAR1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.