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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 5
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:plastid
extracellular: 26928395
msms PMID: 26928395 doi
A Sultan, B Andersen, B Svensson, C Finnie
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os05t0116100-01 Rice extracellular 60.71 87.79
EES18912 Sorghum cytosol 59.09 85.05
Zm00001d035595_P003 Maize cytosol 58.44 83.72
TraesCS1B01G059100.1 Wheat cytosol 64.94 83.33
Zm00001d011034_P004 Maize cytosol 57.79 82.79
TraesCS1A01G045700.1 Wheat golgi 77.6 76.85
GSMUA_Achr11P... Banana cytosol, unclear 52.27 73.85
KRH36212 Soybean cytosol, mitochondrion, nucleus 48.05 69.48
KRG92962 Soybean mitochondrion 48.05 69.48
Solyc05g054760.2.1 Tomato extracellular 47.08 69.05
PGSC0003DMT400060193 Potato cytosol 46.75 68.57
CDY39369 Canola cytosol 47.08 68.08
CDY29420 Canola cytosol 47.08 68.08
Bra025749.1-P Field mustard cytosol 47.08 68.08
AT1G75270.1 Thale cress cytosol 46.75 67.61
Zm00001d011035_P001 Maize endoplasmic reticulum 58.12 67.55
VIT_00s0317g00050.t01 Wine grape cytosol 45.45 66.04
CDX83759 Canola cytosol 40.91 65.28
Bra008188.1-P Field mustard cytosol 44.81 64.49
Bra016503.1-P Field mustard cytosol 43.83 64.29
CDX96659 Canola cytosol 39.29 64.02
CDY62535 Canola cytosol 44.48 64.02
CDY37249 Canola cytosol 44.16 63.55
AT1G19570.1 Thale cress cytosol 43.18 62.44
OQU77257 Sorghum plastid 57.47 61.03
GSMUA_Achr11P... Banana plastid 53.9 59.93
CDY37653 Canola cytosol 11.04 55.74
AT1G19550.1 Thale cress cytosol 27.27 54.9
Solyc11g039930.1.1 Tomato cytosol 16.23 52.63
Bra035356.1-P Field mustard cytosol 17.21 51.96
Solyc09g056180.2.1 Tomato cytosol 15.58 46.6
Solyc06g075520.2.1 Tomato cytosol 16.56 46.36
VIT_00s0317g00040.t01 Wine grape vacuole 6.17 46.34
CDY65006 Canola extracellular 9.74 46.15
Solyc05g013950.1.1 Tomato plastid 20.45 44.68
HORVU7Hr1G038770.22 Barley mitochondrion 42.53 40.81
Protein Annotations
Gene3D:1.20.1050.10MapMan:10.4.1.3Gene3D:3.40.30.10UniProt:A0A287EKE6GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0005515GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009056
GO:GO:0009987GO:GO:0033355GO:GO:0045174GO:GO:0098869InterPro:Glutathione-S-Trfase_C-likeInterPro:Glutathione-S-Trfase_C_sf
InterPro:Glutathione_S-Trfase_NEnsemblPlantsGene:HORVU1Hr1G008120EnsemblPlants:HORVU1Hr1G008120.1InterPro:IPR004045InterPro:IPR010987PFAM:PF13410
PFAM:PF13417PFscan:PS50404PFscan:PS50405PANTHER:PTHR44420PANTHER:PTHR44420:SF2SUPFAM:SSF47616
SUPFAM:SSF52833InterPro:Thioredoxin-like_sfUniParc:UPI000B47D584SEG:seg::
Description
No Description!
Coordinates
chrchr1H:+:17566211..17571908
Molecular Weight (calculated)
33361.9 Da
IEP (calculated)
9.071
GRAVY (calculated)
-0.217
Length
308 amino acids
Sequence
(BLAST)
001: MLALPCFNPT GPVRYSGPVP APEPSRPRST TTDTRARTPG SRPPRAAASG DPSSFFRSLF INTAPRPRRR STALALSASL LLLVALTGLP SAANANMTEV
101: CVKAAVGHPD TLGDCPFSQR VLLTLEEKKV PYEMKLIDVS NKPDWFLKIN PEGKVPVFNG GDGKWIADSD VITQVIEEKY PTPSLVTPPE YASVGSKIFS
201: TFVTFLKSKD ASDGSEKALV DELQALEEHL KAHGPYINGA NVSAADLSLA PKLFHLQVAL EHFKGWKVPE TLTSVHAYTE ALFSRESFVK TKPTKENLIA
301: GWAPKVNP
Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)
001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA
Arabidopsis Description
DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.