Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os05t0116100-01 | Rice | extracellular | 60.71 | 87.79 |
EES18912 | Sorghum | cytosol | 59.09 | 85.05 |
Zm00001d035595_P003 | Maize | cytosol | 58.44 | 83.72 |
TraesCS1B01G059100.1 | Wheat | cytosol | 64.94 | 83.33 |
Zm00001d011034_P004 | Maize | cytosol | 57.79 | 82.79 |
TraesCS1A01G045700.1 | Wheat | golgi | 77.6 | 76.85 |
GSMUA_Achr11P... | Banana | cytosol, unclear | 52.27 | 73.85 |
KRH36212 | Soybean | cytosol, mitochondrion, nucleus | 48.05 | 69.48 |
KRG92962 | Soybean | mitochondrion | 48.05 | 69.48 |
Solyc05g054760.2.1 | Tomato | extracellular | 47.08 | 69.05 |
PGSC0003DMT400060193 | Potato | cytosol | 46.75 | 68.57 |
CDY39369 | Canola | cytosol | 47.08 | 68.08 |
CDY29420 | Canola | cytosol | 47.08 | 68.08 |
Bra025749.1-P | Field mustard | cytosol | 47.08 | 68.08 |
AT1G75270.1 | Thale cress | cytosol | 46.75 | 67.61 |
Zm00001d011035_P001 | Maize | endoplasmic reticulum | 58.12 | 67.55 |
VIT_00s0317g00050.t01 | Wine grape | cytosol | 45.45 | 66.04 |
CDX83759 | Canola | cytosol | 40.91 | 65.28 |
Bra008188.1-P | Field mustard | cytosol | 44.81 | 64.49 |
Bra016503.1-P | Field mustard | cytosol | 43.83 | 64.29 |
CDX96659 | Canola | cytosol | 39.29 | 64.02 |
CDY62535 | Canola | cytosol | 44.48 | 64.02 |
CDY37249 | Canola | cytosol | 44.16 | 63.55 |
AT1G19570.1 | Thale cress | cytosol | 43.18 | 62.44 |
OQU77257 | Sorghum | plastid | 57.47 | 61.03 |
GSMUA_Achr11P... | Banana | plastid | 53.9 | 59.93 |
CDY37653 | Canola | cytosol | 11.04 | 55.74 |
AT1G19550.1 | Thale cress | cytosol | 27.27 | 54.9 |
Solyc11g039930.1.1 | Tomato | cytosol | 16.23 | 52.63 |
Bra035356.1-P | Field mustard | cytosol | 17.21 | 51.96 |
Solyc09g056180.2.1 | Tomato | cytosol | 15.58 | 46.6 |
Solyc06g075520.2.1 | Tomato | cytosol | 16.56 | 46.36 |
VIT_00s0317g00040.t01 | Wine grape | vacuole | 6.17 | 46.34 |
CDY65006 | Canola | extracellular | 9.74 | 46.15 |
Solyc05g013950.1.1 | Tomato | plastid | 20.45 | 44.68 |
HORVU7Hr1G038770.22 | Barley | mitochondrion | 42.53 | 40.81 |
Protein Annotations
Gene3D:1.20.1050.10 | MapMan:10.4.1.3 | Gene3D:3.40.30.10 | UniProt:A0A287EKE6 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
GO:GO:0009987 | GO:GO:0033355 | GO:GO:0045174 | GO:GO:0098869 | InterPro:Glutathione-S-Trfase_C-like | InterPro:Glutathione-S-Trfase_C_sf |
InterPro:Glutathione_S-Trfase_N | EnsemblPlantsGene:HORVU1Hr1G008120 | EnsemblPlants:HORVU1Hr1G008120.1 | InterPro:IPR004045 | InterPro:IPR010987 | PFAM:PF13410 |
PFAM:PF13417 | PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR44420 | PANTHER:PTHR44420:SF2 | SUPFAM:SSF47616 |
SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | UniParc:UPI000B47D584 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr1H:+:17566211..17571908
Molecular Weight (calculated)
33361.9 Da
IEP (calculated)
9.071
GRAVY (calculated)
-0.217
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MLALPCFNPT GPVRYSGPVP APEPSRPRST TTDTRARTPG SRPPRAAASG DPSSFFRSLF INTAPRPRRR STALALSASL LLLVALTGLP SAANANMTEV
101: CVKAAVGHPD TLGDCPFSQR VLLTLEEKKV PYEMKLIDVS NKPDWFLKIN PEGKVPVFNG GDGKWIADSD VITQVIEEKY PTPSLVTPPE YASVGSKIFS
201: TFVTFLKSKD ASDGSEKALV DELQALEEHL KAHGPYINGA NVSAADLSLA PKLFHLQVAL EHFKGWKVPE TLTSVHAYTE ALFSRESFVK TKPTKENLIA
301: GWAPKVNP
101: CVKAAVGHPD TLGDCPFSQR VLLTLEEKKV PYEMKLIDVS NKPDWFLKIN PEGKVPVFNG GDGKWIADSD VITQVIEEKY PTPSLVTPPE YASVGSKIFS
201: TFVTFLKSKD ASDGSEKALV DELQALEEHL KAHGPYINGA NVSAADLSLA PKLFHLQVAL EHFKGWKVPE TLTSVHAYTE ALFSRESFVK TKPTKENLIA
301: GWAPKVNP
001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA
Arabidopsis Description
DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.