Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G19570.1 | CDY15370 | AT2G31790.1 | 21798944 |
| AT1G19570.1 | CDY19104 | AT2G31790.1 | 21798944 |
| AT1G19570.1 | CDY34513 | AT2G31790.1 | 21798944 |
| AT1G19570.1 | CDY42069 | AT2G31790.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96659 | Canola | cytosol | 95.85 | 97.88 |
| Bra016503.1-P | Field mustard | cytosol | 98.45 | 90.48 |
| AT1G19570.1 | Thale cress | cytosol | 82.38 | 74.65 |
| CDY29420 | Canola | cytosol | 81.87 | 74.18 |
| CDY39369 | Canola | cytosol | 81.35 | 73.71 |
| AT1G19550.1 | Thale cress | cytosol | 56.48 | 71.24 |
| KRG92962 | Soybean | mitochondrion | 75.65 | 68.54 |
| Solyc05g054760.2.1 | Tomato | extracellular | 74.09 | 68.1 |
| KRH36212 | Soybean | cytosol, mitochondrion, nucleus | 75.13 | 68.08 |
| PGSC0003DMT400060193 | Potato | cytosol | 73.58 | 67.62 |
| CDY62535 | Canola | cytosol | 74.61 | 67.29 |
| CDY37249 | Canola | cytosol | 74.09 | 66.82 |
| CDY37653 | Canola | cytosol | 20.21 | 63.93 |
| VIT_00s0317g00050.t01 | Wine grape | cytosol | 68.39 | 62.26 |
| Os05t0116100-01 | Rice | extracellular | 67.36 | 61.03 |
| VIT_00s0317g00040.t01 | Wine grape | vacuole | 12.44 | 58.54 |
| GSMUA_Achr6P34340_001 | Banana | cytosol | 66.32 | 58.18 |
| EES18912 | Sorghum | cytosol | 64.25 | 57.94 |
| GSMUA_Achr11P... | Banana | cytosol, unclear | 64.77 | 57.34 |
| Zm00001d011034_P004 | Maize | cytosol | 61.66 | 55.35 |
| Zm00001d035595_P003 | Maize | cytosol | 61.66 | 55.35 |
| TraesCS1B01G059100.1 | Wheat | cytosol | 65.28 | 52.5 |
| CDY65006 | Canola | extracellular | 16.58 | 49.23 |
| Zm00001d011035_P001 | Maize | endoplasmic reticulum | 63.73 | 46.42 |
| Solyc11g039930.1.1 | Tomato | cytosol | 22.28 | 45.26 |
| GSMUA_Achr11P... | Banana | plastid | 63.73 | 44.4 |
| CDX85490 | Canola | mitochondrion | 59.07 | 44.36 |
| CDX69428 | Canola | plastid | 60.1 | 43.61 |
| OQU77257 | Sorghum | plastid | 65.28 | 43.45 |
| HORVU1Hr1G008120.1 | Barley | extracellular | 65.28 | 40.91 |
| Solyc06g075520.2.1 | Tomato | cytosol | 23.32 | 40.91 |
| TraesCS1A01G045700.1 | Wheat | golgi | 65.8 | 40.84 |
| Solyc05g013950.1.1 | Tomato | plastid | 27.98 | 38.3 |
| Solyc09g056180.2.1 | Tomato | cytosol | 19.69 | 36.89 |
| CDY10902 | Canola | mitochondrion | 36.27 | 36.46 |
| CDY33899 | Canola | cytosol, mitochondrion, plastid | 15.54 | 14.63 |
Protein Annotations
| EnsemblPlants:CDX83759 | EnsemblPlantsGene:GSBRNA2T00139497001 | Gene3D:1.20.1050.10 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR44420 |
| PANTHER:PTHR44420:SF2 | PFAM:PF13410 | PFAM:PF13417 | PFscan:PS50404 | ProteinID:CDX83759 | ProteinID:CDX83759.1 |
| SUPFAM:SSF47616 | SUPFAM:SSF52833 | UniParc:UPI0004EDF770 | MapMan:10.4.1.3 | : | : |
Description
BnaC08g18860D
Coordinates
chrLK031834:+:295015..296250
Molecular Weight (calculated)
21411.1 Da
IEP (calculated)
8.657
GRAVY (calculated)
-0.039
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEVCVKAA VGAPDVLGDC PFSQRVLLTL EEKSLPYKMH LINLSDKPKW FLDINPGGKV PVLKIDGKWV PDSDVIVSLL EKKYPEPSLK TPPKFASVGS
101: KIMSTFLQAL ENHLKSHDGP FIAGEKVSAV DLSLAPKLYH LEVALGHFKS WSIPGSLTHV HNYMHALFSL HSFEKTKAEE KYVIAGWAPK VHY
101: KIMSTFLQAL ENHLKSHDGP FIAGEKVSAV DLSLAPKLYH LEVALGHFKS WSIPGSLTHV HNYMHALFSL HSFEKTKAEE KYVIAGWAPK VHY
001: MALEICVKAA VGAPDHLGDC PFSQRALLTL EEKSLTYKIH LINLSDKPQW FLDISPQGKV PVLKIDDKWV TDSDVIVGIL EEKYPDPPLK TPAEFASVGS
101: NIFGTFGTFL KSKDSNDGSE HALLVELEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE
201: KYVISGWAPK VNP
101: NIFGTFGTFL KSKDSNDGSE HALLVELEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE
201: KYVISGWAPK VNP
Arabidopsis Description
DHAR1Glutathione S-transferase DHAR1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.