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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc12g096820.1.1
Solyc12g096830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G19570.1 Solyc12g096820.1.1 AT2G31790.1 21798944
AT1G19570.1 Solyc12g096830.1.1 AT2G31790.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g039930.1.1 Tomato cytosol 64.55 74.74
Solyc09g056180.2.1 Tomato cytosol 62.73 66.99
Solyc05g013950.1.1 Tomato plastid 60.91 47.52
CDY65006 Canola extracellular 24.55 41.54
PGSC0003DMT400060193 Potato cytosol 66.36 34.76
Solyc05g054760.2.1 Tomato extracellular 66.36 34.76
Bra035356.1-P Field mustard cytosol 28.18 30.39
AT1G19550.1 Thale cress cytosol 41.82 30.07
Bra025749.1-P Field mustard cytosol 51.82 26.76
CDY39369 Canola cytosol 51.82 26.76
CDY29420 Canola cytosol 51.82 26.76
AT1G19570.1 Thale cress cytosol 50.91 26.29
AT1G75270.1 Thale cress cytosol 50.0 25.82
KRH36212 Soybean cytosol, mitochondrion, nucleus 49.09 25.35
KRG92962 Soybean mitochondrion 49.09 25.35
Bra016503.1-P Field mustard cytosol 48.18 25.24
CDX96659 Canola cytosol 41.82 24.34
GSMUA_Achr11P... Banana cytosol, unclear 48.18 24.31
EES18912 Sorghum cytosol 46.36 23.83
CDX83759 Canola cytosol 40.91 23.32
Zm00001d035595_P003 Maize cytosol 45.45 23.26
GSMUA_Achr6P34340_001 Banana cytosol 46.36 23.18
CDY62535 Canola cytosol 44.55 22.9
CDY37249 Canola cytosol 44.55 22.9
Bra008188.1-P Field mustard cytosol 44.55 22.9
Os05t0116100-01 Rice extracellular 43.64 22.54
Zm00001d011034_P004 Maize cytosol 43.64 22.33
TraesCS1B01G059100.1 Wheat cytosol 47.27 21.67
GSMUA_Achr11P... Banana plastid 45.45 18.05
Zm00001d011035_P001 Maize endoplasmic reticulum 42.73 17.74
Solyc11g011250.1.1 Tomato plastid 40.91 16.79
TraesCS1A01G045700.1 Wheat golgi 47.27 16.72
HORVU1Hr1G008120.1 Barley extracellular 46.36 16.56
OQU77257 Sorghum plastid 42.73 16.21
CDY37653 Canola cytosol 4.55 8.2
Solyc04g064470.1.1 Tomato nucleus 8.18 5.39
VIT_00s0317g00040.t01 Wine grape vacuole 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc06g075520.2.1EnsemblPlantsGene:Solyc06g075520.2Gene3D:1.20.1050.10InterPro:Glutathione-S-Trfase_C_sfPANTHER:PTHR44420PANTHER:PTHR44420:SF2
SUPFAM:SSF47616UniParc:UPI0002766B7CUniProt:K4C9R7MapMan:10.4.1.3::
Description
No Description!
Coordinates
chr6:+:46898478..46900198
Molecular Weight (calculated)
12604.2 Da
IEP (calculated)
6.784
GRAVY (calculated)
-0.070
Length
110 amino acids
Sequence
(BLAST)
001: MESKDSSDCT EQALFDELKA LEEHLKAHGP YVNGQNVCSV DMSLAPKLYH LKVALGHFKK WSVTESLTHV RNYMKDFVGN MSCFLFYSRD VAASVVVEMK
101: IVFIYLTHWP
Best Arabidopsis Sequence Match ( AT1G75270.1 )
(BLAST)
001: MALDICVKVA VGAPDVLGDC PFSQRVLLTL EEKKLPYKTH LINVSDKPQW FLDISPEGKV PVVKLDGKWV ADSDVIVGLL EEKYPEPSLK TPPEFASVGS
101: KIFGAFVTFL KSKDANDGSE KALVDELEAL ENHLKTHSGP FVAGEKITAV DLSLAPKLYH LEVALGHYKN WSVPESLTSV RNYAKALFSR ESFENTKAKK
201: EIVVAGWESK VNA
Arabidopsis Description
DHAR2Glutathione S-transferase DHAR2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRL8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.