Factsheet for Solyc09g056180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g096820.1.1
Solyc12g096830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19570.1	Solyc12g096820.1.1	AT2G31790.1	21798944
AT1G19570.1	Solyc12g096830.1.1	AT2G31790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g039930.1.1	Tomato	cytosol	64.08	69.47
Solyc06g075520.2.1	Tomato	cytosol	66.99	62.73
Solyc05g013950.1.1	Tomato	plastid	60.19	43.97
CDY65006	Canola	extracellular	25.24	40.0
Solyc05g054760.2.1	Tomato	extracellular	65.05	31.9
PGSC0003DMT400060193	Potato	cytosol	65.05	31.9
Bra035356.1-P	Field mustard	cytosol	29.13	29.41
AT1G19550.1	Thale cress	cytosol	36.89	24.84
AT1G75270.1	Thale cress	cytosol	50.49	24.41
CDY29420	Canola	cytosol	48.54	23.47
CDY39369	Canola	cytosol	48.54	23.47
Bra025749.1-P	Field mustard	cytosol	48.54	23.47
AT1G19570.1	Thale cress	cytosol	48.54	23.47
KRG92962	Soybean	mitochondrion	46.6	22.54
KRH36212	Soybean	cytosol, mitochondrion, nucleus	45.63	22.07
EES18912	Sorghum	cytosol	45.63	21.96
Bra016503.1-P	Field mustard	cytosol	44.66	21.9
GSMUA_Achr6P34340_001	Banana	cytosol	46.6	21.82
GSMUA_Achr11P...	Banana	cytosol, unclear	45.63	21.56
CDY62535	Canola	cytosol	44.66	21.5
Bra008188.1-P	Field mustard	cytosol	44.66	21.5
CDY37249	Canola	cytosol	44.66	21.5
Zm00001d035595_P003	Maize	cytosol	44.66	21.4
Os05t0116100-01	Rice	extracellular	42.72	20.66
CDX96659	Canola	cytosol	37.86	20.63
Zm00001d011034_P004	Maize	cytosol	42.72	20.47
TraesCS1B01G059100.1	Wheat	cytosol	46.6	20.0
CDX83759	Canola	cytosol	36.89	19.69
Zm00001d011035_P001	Maize	endoplasmic reticulum	43.69	16.98
Solyc11g011250.1.1	Tomato	plastid	42.72	16.42
GSMUA_Achr11P...	Banana	plastid	42.72	15.88
HORVU1Hr1G008120.1	Barley	extracellular	46.6	15.58
OQU77257	Sorghum	plastid	43.69	15.52
TraesCS1A01G045700.1	Wheat	golgi	46.6	15.43
CDY37653	Canola	cytosol	2.91	4.92
Solyc04g064470.1.1	Tomato	nucleus	7.77	4.79
VIT_00s0317g00040.t01	Wine grape	vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g056180.2.1	EnsemblPlantsGene:Solyc09g056180.2	Gene3D:1.20.1050.10	InterPro:Glutathione-S-Trfase_C_sf	PANTHER:PTHR44420	PANTHER:PTHR44420:SF2
SUPFAM:SSF47616	UniParc:UPI000276B171	UniProt:K4CTB3	MapMan:10.4.1.3	:	:

Description

No Description!

Coordinates

chr9:-:47329986..47333574

Molecular Weight (calculated)

11733.0 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.283

Length

103 amino acids

Sequence
(BLAST)

001: MKSKDSSDCT EHALFDELKA LEEHLKAHGP YVNGQNVCSV DMSLAPKLCH LEVALGNFKK WSVTESLSHV RNYMKNDIKS AFWSMLLCYI EQHVSHSLFS
101: SMQ

Best Arabidopsis Sequence Match ( AT1G19570.1 )
(BLAST)

001: MALEICVKAA VGAPDHLGDC PFSQRALLTL EEKSLTYKIH LINLSDKPQW FLDISPQGKV PVLKIDDKWV TDSDVIVGIL EEKYPDPPLK TPAEFASVGS
101: NIFGTFGTFL KSKDSNDGSE HALLVELEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE
201: KYVISGWAPK VNP

Arabidopsis Description

DHAR1Glutathione S-transferase DHAR1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FWR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.