Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G19570.1 | Thale cress | cytosol | 89.54 | 64.32 |
| CDX96659 | Canola | cytosol | 72.55 | 58.73 |
| CDX83759 | Canola | cytosol | 71.24 | 56.48 |
| Bra025749.1-P | Field mustard | cytosol | 74.51 | 53.52 |
| CDY29420 | Canola | cytosol | 74.51 | 53.52 |
| CDY39369 | Canola | cytosol | 73.86 | 53.05 |
| Bra016503.1-P | Field mustard | cytosol | 71.9 | 52.38 |
| Solyc11g039930.1.1 | Tomato | cytosol | 29.41 | 47.37 |
| AT1G75270.1 | Thale cress | cytosol | 65.36 | 46.95 |
| Solyc05g054760.2.1 | Tomato | extracellular | 62.75 | 45.71 |
| KRH36212 | Soybean | cytosol, mitochondrion, nucleus | 62.75 | 45.07 |
| KRG92962 | Soybean | mitochondrion | 62.75 | 45.07 |
| PGSC0003DMT400060193 | Potato | cytosol | 60.78 | 44.29 |
| VIT_00s0317g00050.t01 | Wine grape | cytosol | 60.78 | 43.87 |
| Solyc06g075520.2.1 | Tomato | cytosol | 30.07 | 41.82 |
| GSMUA_Achr11P... | Banana | cytosol, unclear | 58.82 | 41.28 |
| EES18912 | Sorghum | cytosol | 56.86 | 40.65 |
| Os05t0116100-01 | Rice | extracellular | 56.21 | 40.38 |
| GSMUA_Achr6P34340_001 | Banana | cytosol | 57.52 | 40.0 |
| Zm00001d035595_P003 | Maize | cytosol | 54.9 | 39.07 |
| Zm00001d011034_P004 | Maize | cytosol | 54.25 | 38.6 |
| Solyc09g056180.2.1 | Tomato | cytosol | 24.84 | 36.89 |
| TraesCS1B01G059100.1 | Wheat | cytosol | 55.56 | 35.42 |
| Solyc05g013950.1.1 | Tomato | plastid | 30.72 | 33.33 |
| AT5G16710.1 | Thale cress | plastid | 54.25 | 32.17 |
| Zm00001d011035_P001 | Maize | endoplasmic reticulum | 54.25 | 31.32 |
| GSMUA_Achr11P... | Banana | plastid | 54.25 | 29.96 |
| OQU77257 | Sorghum | plastid | 54.25 | 28.62 |
| TraesCS1A01G045700.1 | Wheat | golgi | 56.21 | 27.65 |
| HORVU1Hr1G008120.1 | Barley | extracellular | 54.9 | 27.27 |
| VIT_00s0317g00040.t01 | Wine grape | vacuole | 1.31 | 4.88 |
Protein Annotations
| Gene3D:1.20.1050.10 | MapMan:10.4.1.3 | Gene3D:3.40.30.10 | EntrezGene:838542 | ProteinID:AAF79442.1 | ProteinID:AEE29867.1 |
| ArrayExpress:AT1G19550 | EnsemblPlantsGene:AT1G19550 | RefSeq:AT1G19550 | TAIR:AT1G19550 | RefSeq:AT1G19550-TAIR-G | EnsemblPlants:AT1G19550.1 |
| TAIR:AT1G19550.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004364 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006749 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | InterPro:Glutathione-S-Trfase_C-like | InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N |
| InterPro:IPR004045 | InterPro:IPR010987 | RefSeq:NP_173386.1 | PFAM:PF13410 | PFAM:PF13417 | PO:PO:0000293 |
| PO:PO:0009025 | PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR44420 | PANTHER:PTHR44420:SF2 | UniProt:Q9LN39 |
| SUPFAM:SSF47616 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf | UniParc:UPI000004828E | : | : |
Description
F18O14.31 [Source:UniProtKB/TrEMBL;Acc:Q9LN39]
Coordinates
chr1:-:6767451..6768158
Molecular Weight (calculated)
17062.3 Da
IEP (calculated)
5.853
GRAVY (calculated)
-0.204
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVVQICSSP SHEMFWDISP QGKVPVLKID DKWVTDSDAT VGILEEKYPD PPLKTPAEFA SVGSNIFEAL ENHLKSHDGP FIAGERVSAV DLSLAPKLYH
101: LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE KCVISGWAPK VNP
101: LQVALGHFKS WSVPESFPHV HNYMKTLFSL DSFEKTKTEE KCVISGWAPK VNP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.