Factsheet for GSMUA_Achr4P31650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P13160_001
GSMUA_Achr4P23050_001
GSMUA_Achr4P28300_001
GSMUA_Achr4P32070_001
GSMUA_Achr5P02100_001
GSMUA_Achr6P31690_001
GSMUA_Achr7P00850_001
GSMUA_Achr9P09830_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G34720.1	GSMUA_Achr2P13160_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr4P23050_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr4P28300_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr4P32070_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr5P02100_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr6P31690_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr7P00850_001	AT4G19700.1	21798944
AT2G34720.1	GSMUA_Achr9P09830_001	AT4G19700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01070_001	Banana	nucleus	74.12	72.22
GSMUA_Achr9P10300_001	Banana	nucleus	59.21	57.69
VIT_10s0003g04650.t01	Wine grape	nucleus	48.25	52.88
KRH11777	Soybean	nucleus	45.18	50.24
HORVU0Hr1G010230.1	Barley	nucleus	34.65	49.69
CDY02298	Canola	nucleus	39.47	49.18
Bra032395.1-P	Field mustard	nucleus	39.04	48.63
AT1G30500.2	Thale cress	nucleus	40.35	48.42
KRH36784	Soybean	nucleus	46.05	47.95
CDY09571	Canola	nucleus	38.16	47.54
PGSC0003DMT400030813	Potato	nucleus	41.67	47.03
KRH42997	Soybean	nucleus	42.11	46.6
Solyc02g069860.2.1	Tomato	nucleus	41.67	45.67
Os12t0613000-01	Rice	nucleus	42.98	45.16
PGSC0003DMT400054416	Potato	nucleus	41.23	44.76
EES17387	Sorghum	nucleus	41.23	44.13
TraesCS5A01G043300.2	Wheat	nucleus	40.35	43.81
KRH59113	Soybean	nucleus	41.67	43.78
TraesCS5D01G052200.2	Wheat	nucleus	40.35	43.6
AT2G34720.1	Thale cress	nucleus	37.72	43.43
HORVU5Hr1G010600.10	Barley	nucleus	40.35	42.99
CDY31636	Canola	nucleus	36.84	42.64
Bra005397.1-P	Field mustard	nucleus	36.84	42.64
TraesCS5B01G047100.2	Wheat	nucleus	38.6	42.51
CDX84285	Canola	nucleus	36.4	42.35
Os08t0196700-01	Rice	nucleus	35.53	41.97
GSMUA_Achr7P07860_001	Banana	nucleus	28.07	31.84
Zm00001d041491_P001	Maize	nucleus	39.04	30.8
GSMUA_Achr4P03600_001	Banana	nucleus	38.6	29.53
GSMUA_Achr8P16700_001	Banana	nucleus	34.65	27.43
GSMUA_Achr2P21730_001	Banana	nucleus	34.21	26.8
GSMUA_Achr3P29730_001	Banana	nucleus	37.28	26.56
GSMUA_Achr8P30700_001	Banana	nucleus	35.09	25.24
GSMUA_Achr4P11090_001	Banana	vacuole	39.91	24.86
GSMUA_AchrUn_...	Banana	nucleus	33.77	24.68
GSMUA_Achr4P31420_001	Banana	mitochondrion, nucleus	28.07	18.99
GSMUA_Achr4P28390_001	Banana	nucleus	26.75	18.94
GSMUA_Achr5P02590_001	Banana	nucleus	26.32	18.52

Protein Annotations

MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602
EnsemblPlantsGene:GSMUA_Achr4G31650_001	EnsemblPlants:GSMUA_Achr4P31650_001	EnsemblPlants:GSMUA_Achr4T31650_001	InterPro:IPR001289	UniProt:M0STS7	InterPro:NFYA
PFAM:PF02045	PRINTS:PR00616	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF18
SMART:SM00521	UniParc:UPI0002960A14	:	:	:	:

Description

Nuclear transcription factor Y subunit A-7 [Source:GMGC_GENE;Acc:GSMUA_Achr4G31650_001]

Coordinates

chr4:+:28760350..28765322

Molecular Weight (calculated)

24956.6 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.910

Length

228 amino acids

Sequence
(BLAST)

001: MTSSVQSLSD NSETDEQQDQ VQSENQHQPS ATASLHSGVA THLPGYMVPT SHFDVAQTVA PAAYPFVDPY YGGMFAAYSG QHVIHPQLIG VNHPGVPLPT
101: DAIEEPVYVN AKQYHGILRR RQSRAKAESK NKLAKVRKPY LHESRHLHAV RRARGCGGRF LNSKSEADQQ NESQGNQQDE AASDDMAQRS DVPASDERSA
201: NKENTKLSSN RAEPSKVGDS DKLPVGNE

Best Arabidopsis Sequence Match ( AT1G30500.2 )
(BLAST)

001: MTSSIHELSD NIGSHEKQEQ RDSHFQPPIP SARNYESIVT SLVYSDPGTT NSMAPGQYPY PDPYYRSIFA PPPQPYTGVH LQLMGVQQQG VPLPSDAVEE
101: PVFVNAKQYH GILRRRQSRA RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK EDEHHEDSSH EEKSNLSAGK SAMAASSGTS

Arabidopsis Description

NFYA7Nuclear transcription factor Y subunit A-7 [Source:UniProtKB/Swiss-Prot;Acc:Q84JP1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.