Factsheet for PGSC0003DMT400000740

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009050.1.1	Tomato	nucleus	77.74	92.49
KRH37469	Soybean	nucleus	33.55	44.3
KRH12475	Soybean	nucleus	32.56	42.98
KRH02649	Soybean	nucleus	29.24	41.31
KRH19255	Soybean	nucleus	28.24	36.48
PGSC0003DMT400055982	Potato	nucleus	23.59	32.87
PGSC0003DMT400030813	Potato	nucleus	21.93	32.67
PGSC0003DMT400054416	Potato	nucleus	21.59	30.95
VIT_11s0016g01480.t01	Wine grape	endoplasmic reticulum, golgi	41.2	30.77
PGSC0003DMT400006358	Potato	nucleus	25.25	26.86
PGSC0003DMT400021053	Potato	nucleus	20.93	26.25
PGSC0003DMT400018959	Potato	nucleus	24.58	24.67
PGSC0003DMT400017698	Potato	nucleus	23.26	23.1
PGSC0003DMT400027785	Potato	nucleus	22.59	21.94
PGSC0003DMT400072322	Potato	nucleus	13.95	21.43
PGSC0003DMT400055061	Potato	nucleus	18.27	17.68

Protein Annotations

EntrezGene:102595015	MapMan:15.5.51.1	InterPro:CCAAT-binding_factor_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016602	InterPro:IPR001289	UniProt:M0ZH80	InterPro:NFYA	PFAM:PF02045	EnsemblPlantsGene:PGSC0003DMG400000272
PGSC:PGSC0003DMG400000272	EnsemblPlants:PGSC0003DMT400000740	ScanProsite:PS00686	PFscan:PS51152	PANTHER:PTHR12632	PANTHER:PTHR12632:SF8
SMART:SM00521	UniParc:UPI000296487B	:	:	:	:

Description

YA5 [Source:PGSC_GENE;Acc:PGSC0003DMG400000272]

Coordinates

chr12:+:3488897..3493283

Molecular Weight (calculated)

33584.8 Da

IEP (calculated)

9.716

GRAVY (calculated)

-0.590

Length

301 amino acids

Sequence
(BLAST)

001: MKSLDPDLQG ETLRLTHSTL NSQDEMTASG KTHSQDQCAS SDYVHDERYG REMQVQIKPA LFSLQNEVAH STGFSAFGYS DPYISGLYTA YGPQPYPHMM
101: GIAPARVPLP IDMAEDGPIY VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK YEKFHHIDQY GRRNMQIVSY RDLTKGKKLT AYDLLPVGGG RTLVALHFQV
201: LGLTLCATRA VNRVRGSGGR FLSSKKVHQS DPNSYPTNST SSLDSVEHEG STSAFSSVRQ DVVHNGINFQ QQPDHMAFSV SSHMVITMQG NGSQQRAPVV
301: R

Best Arabidopsis Sequence Match ( AT1G72830.2 )
(BLAST)

001: MMHQMLNKKD SATHSTLPYL NTSISWGVVP TDSVANRRGS AESLSLKVDS RPGHIQTTKQ ISFQDQDSSS TQSTGQSYTE VASSGDDNPS RQISFSAKSG
101: SEITQRKGFA SNPKQGSMTG FPNIHFAPAQ ANFSFHYADP HYGGLLAATY LPQAPTCNPQ MVSMIPGRVP LPAELTETDP VFVNAKQYHA IMRRRQQRAK
201: LEAQNKLIRA RKVPYLHESR HVHALKRPRG SGGRFLNTKK LLQESEQAAA REQEQDKLGQ QVNRKTNMSR FEAHMLQNNK DRSSTTSGSD ITSVSDGADI
301: FGHTEFQFSG FPTPINRAML VHGQSNDMHG GGDMHHFSVH I

Arabidopsis Description

HAP2CNuclear factor Y, subunit A3 [Source:UniProtKB/TrEMBL;Acc:F4IEZ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.