Factsheet for TraesCS5B01G375500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G383000.1	Wheat	nucleus	94.74	94.15
TraesCS5A01G373500.1	Wheat	nucleus	93.81	92.94
HORVU5Hr1G092700.5	Barley	nucleus	93.81	77.69
Zm00001d033215_P001	Maize	nucleus	64.09	64.29
Os03t0647600-01	Rice	nucleus	68.73	62.71
TraesCS5B01G028500.1	Wheat	nucleus	64.4	61.36
KXG37939	Sorghum	nucleus	64.09	60.0
Zm00001d013676_P002	Maize	nucleus	61.61	58.36
Solyc10g081840.1.1	Tomato	nucleus	20.74	43.51
PGSC0003DMT400072322	Potato	nucleus	22.91	37.76
VIT_08s0032g01190.t01	Wine grape	nucleus	37.77	37.2
CDY05192	Canola	nucleus	20.43	36.87
AT5G06510.2	Thale cress	nucleus	29.72	35.69
KRH68018	Soybean	nucleus	36.22	35.67
KRH72156	Soybean	nucleus	36.22	34.93
PGSC0003DMT400055061	Potato	nucleus	33.44	34.73
Solyc01g006930.2.1	Tomato	nucleus	32.51	33.76
KRH32866	Soybean	nucleus	33.75	33.33
KRG96274	Soybean	endoplasmic reticulum, extracellular, vacuole	35.6	33.24
CDX70098	Canola	nucleus	26.93	32.58
Bra009200.1-P	Field mustard	nucleus	26.93	32.58
CDY18809	Canola	nucleus	27.24	32.12
CDX74133	Canola	nucleus	27.86	32.03
Bra001164.1-P	Field mustard	nucleus	27.86	32.03
CDY14662	Canola	nucleus	27.86	32.03
Bra040529.1-P	Field mustard	nucleus	27.55	31.67
TraesCS4B01G290400.1	Wheat	nucleus	23.53	31.15
CDX98930	Canola	nucleus	25.7	31.09
TraesCS5B01G047100.2	Wheat	nucleus	18.27	28.5
AT3G05690.2	Thale cress	mitochondrion	28.48	27.71
TraesCS6B01G366100.2	Wheat	nucleus	19.81	25.1
TraesCS2B01G198700.1	Wheat	nucleus	22.6	24.33

Protein Annotations

EnsemblPlants:TraesCS5B01G375500.1	EnsemblPlantsGene:TraesCS5B01G375500	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001289	InterPro:NFYA
PANTHER:PTHR12632	PANTHER:PTHR12632:SF17	PFAM:PF02045	PFscan:PS51152	PRINTS:PR00616	SEG:seg
SMART:SM00521	MapMan:15.5.51.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:552921546..552924281

Molecular Weight (calculated)

34609.8 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.558

Length

323 amino acids

Sequence
(BLAST)

001: MMSFKGHEGF GQASNGGGGP VPWWTVSQML YGDPGAALSS SPEAEARRDG QFQVVPRAQG ILDPAPPPPA PRSGAPEVLK FSVFQGNLES GGNKGEKALE
101: HSATIALQSP LPEYNSHFEF GPGPSMMSSG YPSADQCYGL LTTYAMKSTP GGRLLLPLNA TADAPIYVNA KQYEGILRRR RARAKVEPEN QLVKGRKPYL
201: HESRHRHAMR RARGTGGRFL NTKEGGGKDT PGGGKRADCA PPTRFATSPS SVIPQSRSSI SSLSGSEVSS MYDHDDVDHY NSIEHLRTPF FTPLPIIMDG
301: EHGASAPFKW ATAADGCCEL LKA

Best Arabidopsis Sequence Match ( AT5G06510.3 )
(BLAST)

001: MQMFEGDFIY AVIDLGGEKS SRDVPKPHVA FAMQSACFEF GFAQPMMYTK HPHVEQYYGV VSAYGSQRSS GRVMIPLKME TEEDGTIYVN SKQYHGIIRR
101: RQSRAKAEKL SRCRKPYMHH SRHLHAMRRP RGSGGRFLNT KTADAAKQSK PSNSQSSEVF HPENETINSS REANESNLSD SAVTSMDYFL SSSAYSPGGM
201: VMPIKWNAAA MDIGCCKLNI

Arabidopsis Description

NFYA10NF-YA10 [Source:UniProtKB/TrEMBL;Acc:A0A178URE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.