CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX68821
CDX70720
CDX73599
CDX75224
CDX77702
CDX78128
CDX78712
CDX84933
CDX89333
CDX94330
CDY03907
CDY13344
CDY15722
CDY27605
CDY33485
CDY37158
CDY43620
CDY61387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	CDX84933	AT1G27300.1	21798944
AT5G39510.1	CDY03907	AT1G27300.1	21798944
AT5G39510.1	CDY15722	AT1G27300.1	21798944
AT5G39510.1	CDY27605	AT1G27300.1	21798944
AT5G39510.1	CDX67539	AT3G52850.1	10397763
AT5G39510.1	CDX73599	AT3G52850.1	10397763
AT5G39510.1	CDX78128	AT3G52850.1	10397763
AT5G39510.1	CDY13344	AT3G52850.1	10397763
AT5G39510.1	CDX89333	AT4G26455.1	21798944
AT5G39510.1	CDX94330	AT4G26455.1	21798944
AT5G39510.1	CDX68821	AT4G32150.1	24556575
AT5G39510.1	CDX75224	AT4G32150.1	24556575
AT5G39510.1	CDY61387	AT4G32150.1	24556575
AT5G39510.1	CDX70720	AT5G16830.1	10397763
AT5G39510.1	CDX78712	AT5G16830.1	10397763
AT5G39510.1	CDX77702	AT5G46860.1	12815100
AT5G39510.1	CDY33485	AT5G46860.1	12815100
AT5G39510.1	CDY37158	AT5G46860.1	12815100
AT5G39510.1	CDY43620	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	100.0	100.0
CDY30250	Canola	cytosol, golgi, nucleus	99.09	99.09
CDY37005	Canola	cytosol, golgi, nucleus	89.14	89.14
CDY19995	Canola	cytosol	82.35	82.35
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	82.35	82.35
CDY00099	Canola	cytosol	81.45	81.45
KRG93576	Soybean	cytosol	71.95	71.95
PGSC0003DMT400050219	Potato	cytosol	71.95	71.95
KRH18448	Soybean	endoplasmic reticulum	71.49	71.49
Solyc03g115760.2.1	Tomato	nucleus, plastid	71.49	71.49
VIT_14s0108g01200.t01	Wine grape	cytosol	70.14	70.14
CDX95233	Canola	mitochondrion	27.6	66.3
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	27.6	66.3
KRH40042	Soybean	cytosol	60.18	58.59
CDY28553	Canola	cytosol	58.37	58.11
CDY44068	Canola	cytosol	58.37	58.11
CDX79270	Canola	cytosol	25.79	44.19
CDY42125	Canola	mitochondrion	24.43	38.85

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	GO:A0A078CBI8	EnsemblPlants:CDX74451	ProteinID:CDX74451
ProteinID:CDX74451.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSBRNA2T00114320001	InterPro:IPR038407	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000253EB55	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:

Description

BnaA04g09380D

Coordinates

chrLK031801:-:379639..381473

Molecular Weight (calculated)

24741.0 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.400

Length

221 amino acids

Sequence
(BLAST)

001: MTEVFNGYER QYCDLSANLS KKCSSALALD GEQKKQKLSE IRSGLDNAEA LIRKMDVEAR SLPPSIRTSL LVKLREFKSD LNNFKSEVKR ITSANLNAAA
101: RDELLEAGLA DTKTASADQR ARLMMSTDRL GRTTDRIKDS RRMMIETEEL GVSVLQDLHS QRQSLLRTGD TLSGVDENVG KSKKILTGMT RRMNRNKWTI
201: GAIITALVAA IILILYFKLT K

Best Arabidopsis Sequence Match ( AT5G39510.1 )
(BLAST)

001: MSDVFDGYER QYCELSASLS KKCSSAISLD GEQKKQKLSE IKSGLENAEV LIRKMDLEAR TLPPNLKSSL LVKLREFKSD LNNFKTEVKR ITSGQLNAAA
101: RDELLEAGMA DTKTASADQR ARLMMSTERL GRTTDRVKDS RRTMMETEEI GVSILQDLHG QRQSLLRAHE TLHGVDDNIG KSKKILTDMT RRMNKNKWTI
201: GAIIIALIAA IFIILYFKLT K

Arabidopsis Description

VTI11Vesicle transport v-SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL6]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.