CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036218.1-P	Field mustard	cytosol	100.0	100.0
CDY00099	Canola	cytosol	99.09	99.09
AT3G29100.3	Thale cress	cytosol	92.31	92.31
CDY37005	Canola	cytosol, golgi, nucleus	85.07	85.07
CDY30250	Canola	cytosol, golgi, nucleus	83.26	83.26
CDX74451	Canola	cytosol, golgi, nucleus	82.35	82.35
PGSC0003DMT400050219	Potato	cytosol	78.28	78.28
Solyc03g115760.2.1	Tomato	nucleus, plastid	77.83	77.83
KRG93576	Soybean	cytosol	76.47	76.47
KRH18448	Soybean	endoplasmic reticulum	76.02	76.02
VIT_14s0108g01200.t01	Wine grape	cytosol	71.04	71.04
CDY28553	Canola	cytosol	61.99	61.71
CDY44068	Canola	cytosol	61.99	61.71
KRH40042	Soybean	cytosol	63.35	61.67
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	24.89	59.78
CDX95233	Canola	mitochondrion	24.43	58.7
CDX79270	Canola	cytosol	28.51	48.84
CDY42125	Canola	mitochondrion	24.43	38.85

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	GO:A0A078G0B5	UniProt:A0A078G0B5	EnsemblPlants:CDY19995
ProteinID:CDY19995	ProteinID:CDY19995.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSBRNA2T00009822001	InterPro:IPR038407	PFAM:PF05008
PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0002541DE1	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf

Description

BnaA09g02560DBnaA09g02560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0B5]

Coordinates

chrLK032102:+:317567..319194

Molecular Weight (calculated)

24967.4 Da

IEP (calculated)

10.173

GRAVY (calculated)

-0.418

Length

221 amino acids

Sequence
(BLAST)

001: MSRVFEGYER QYCELSANLS KKCTSAIALD GEQKKQKLSE IKSGVEDAET LIKKMDLEVR SLPPSVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNASA
101: RDELLEAGMA DTVTASADQR SRLMMSTDRL GRTTDRIKDS RKTMLETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTAMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.