Factsheet for Bra036218.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19995	Canola	cytosol	100.0	100.0
CDY00099	Canola	cytosol	99.09	99.09
AT3G29100.3	Thale cress	cytosol	92.31	92.31
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	82.35	82.35
PGSC0003DMT400050219	Potato	cytosol	78.28	78.28
Solyc03g115760.2.1	Tomato	nucleus, plastid	77.83	77.83
KRG93576	Soybean	cytosol	76.47	76.47
KRH18448	Soybean	endoplasmic reticulum	76.02	76.02
VIT_14s0108g01200.t01	Wine grape	cytosol	71.04	71.04
KRH40042	Soybean	cytosol	63.35	61.67
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	24.89	59.78
Bra041108.1-P	Field mustard	cytosol	61.99	54.8

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	EnsemblPlantsGene:Bra036218	EnsemblPlants:Bra036218.1	EnsemblPlants:Bra036218.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025
InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	UniProt:M4F562	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI0002541DE1	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:	:

Description

AT5G39510 (E=5e-097) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor

Coordinates

chrA09:-:2140004..2141125

Molecular Weight (calculated)

24967.4 Da

IEP (calculated)

10.173

GRAVY (calculated)

-0.418

Length

221 amino acids

Sequence
(BLAST)

001: MSRVFEGYER QYCELSANLS KKCTSAIALD GEQKKQKLSE IKSGVEDAET LIKKMDLEVR SLPPSVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNASA
101: RDELLEAGMA DTVTASADQR SRLMMSTDRL GRTTDRIKDS RKTMLETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTAMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.