CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036218.1-P	Field mustard	cytosol	99.09	99.09
CDY19995	Canola	cytosol	99.09	99.09
AT3G29100.3	Thale cress	cytosol	92.31	92.31
CDY37005	Canola	cytosol, golgi, nucleus	84.16	84.16
CDY30250	Canola	cytosol, golgi, nucleus	82.35	82.35
CDX74451	Canola	cytosol, golgi, nucleus	81.45	81.45
PGSC0003DMT400050219	Potato	cytosol	77.38	77.38
Solyc03g115760.2.1	Tomato	nucleus, plastid	76.92	76.92
KRG93576	Soybean	cytosol	75.57	75.57
KRH18448	Soybean	endoplasmic reticulum	75.11	75.11
VIT_14s0108g01200.t01	Wine grape	cytosol	70.14	70.14
CDY28553	Canola	cytosol	61.54	61.26
CDY44068	Canola	cytosol	61.54	61.26
KRH40042	Soybean	cytosol	62.9	61.23
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	24.89	59.78
CDX95233	Canola	mitochondrion	24.43	58.7
CDX79270	Canola	cytosol	28.51	48.84
CDY42125	Canola	mitochondrion	24.43	38.85

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	GO:A0A078EH48	EnsemblPlants:CDY00099	ProteinID:CDY00099
ProteinID:CDY00099.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025
InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSBRNA2T00109598001	InterPro:IPR038407	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI0004EB21DE	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:	:

Description

BnaC09g02020D

Coordinates

chrLK031916:+:780769..782376

Molecular Weight (calculated)

24990.4 Da

IEP (calculated)

10.173

GRAVY (calculated)

-0.413

Length

221 amino acids

Sequence
(BLAST)

001: MSRVFEGYER QYCEISANLS KKCTSAIALD GEQKKQKLSE IKSGVEDAET LIKKMDLEVR SLPPSVKSSL LVKLREYKSD LNNFKTEVKR ITSGHLNASA
101: RDELLEAGMA DTVTASADQR SRLMMSTDRL GRTTDRIKDS RKTMLETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTAMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.