CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH03646
KRH07229
KRH07476
KRH14588
KRH20159
KRH31520
KRH39570
KRH56393
KRH62532
KRH73537
KRH74378
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	KRG97393	AT1G27300.1	21798944
AT5G39510.1	KRH31520	AT1G27300.1	21798944
AT5G39510.1	KRH76090	AT1G27300.1	21798944
AT5G39510.1	KRH56393	AT4G26455.1	21798944
AT5G39510.1	KRH62532	AT4G26455.1	21798944
AT5G39510.1	KRH03646	AT4G32150.1	24556575
AT5G39510.1	KRH14588	AT4G32150.1	24556575
AT5G39510.1	KRH20159	AT4G32150.1	24556575
AT5G39510.1	KRH73537	AT4G32150.1	24556575
AT5G39510.1	KRH07229	AT5G46860.1	12815100
AT5G39510.1	KRH07476	AT5G46860.1	12815100
AT5G39510.1	KRH39570	AT5G46860.1	12815100
AT5G39510.1	KRH74378	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93576	Soybean	cytosol	98.64	98.64
PGSC0003DMT400050219	Potato	cytosol	77.38	77.38
Solyc03g115760.2.1	Tomato	nucleus, plastid	76.92	76.92
Bra036218.1-P	Field mustard	cytosol	76.02	76.02
CDY19995	Canola	cytosol	76.02	76.02
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	75.57	75.57
VIT_14s0108g01200.t01	Wine grape	cytosol	75.57	75.57
CDY00099	Canola	cytosol	75.11	75.11
AT3G29100.3	Thale cress	cytosol	74.21	74.21
CDY37005	Canola	cytosol, golgi, nucleus	72.85	72.85
CDY30250	Canola	cytosol, golgi, nucleus	71.95	71.95
CDX74451	Canola	cytosol, golgi, nucleus	71.49	71.49
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	71.49	71.49
KRH40042	Soybean	cytosol	72.4	70.48
KRH54584	Soybean	cytosol	67.87	67.87
KRH63296	Soybean	cytosol	25.79	64.77
KRH74936	Soybean	endoplasmic reticulum	62.44	62.16
KRH70794	Soybean	endoplasmic reticulum	61.54	61.26
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	20.36	48.91
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	20.36	48.91
CDX95233	Canola	mitochondrion	19.91	47.83
AT5G39630.1	Thale cress	cytosol	42.99	45.89

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100816145	MapMan:22.7.2.1	EMBL:ACUP02008073	EMBL:BT096784
UniProt:C6TGN3	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G060700	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896	GO:GO:0008150
GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407
EnsemblPlants:KRH18448	ProteinID:KRH18448	ProteinID:KRH18448.1	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix
UniParc:UPI0001B16C0C	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:	:

Description

hypothetical protein

Coordinates

chr13:+:15811797..15815790

Molecular Weight (calculated)

24738.2 Da

IEP (calculated)

10.137

GRAVY (calculated)

-0.370

Length

221 amino acids

Sequence
(BLAST)

001: MSNVFEGYER QYCELSANLA KKCTAAGVLN GEQKKQKVSE VKAGIDEAEA LIRKMDLEAR SLQPNIKGVL LAKLREYKSD LNNLKSEVKK IVSGNLNPSA
101: RDELLESGMA DAMTASADQR TRLMVSTERL NKTSDRVKDS RRTMLETEEL GVSILQDLHS QRQSLLHAHN TLHGVDDNIG KSKKILTNMS RRMNKNKWVI
201: GGIVLVLIIA IIVILYFKLS K

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.