Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63296 | Soybean | cytosol | 35.29 | 88.64 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 80.09 | 80.09 |
| GSMUA_Achr6P35750_001 | Banana | cytosol | 76.02 | 76.02 |
| EES01350 | Sorghum | cytosol | 74.21 | 74.21 |
| Zm00001d011688_P001 | Maize | cytosol, golgi, nucleus | 73.76 | 73.76 |
| GSMUA_Achr4P08630_001 | Banana | cytosol, golgi, nucleus | 73.3 | 73.3 |
| TraesCS3A01G252300.1 | Wheat | nucleus | 72.4 | 72.4 |
| TraesCS3B01G283800.1 | Wheat | nucleus | 72.4 | 72.4 |
| Os01t0707300-01 | Rice | plasma membrane | 72.4 | 72.4 |
| HORVU3Hr1G066580.1 | Barley | cytosol, golgi, nucleus | 71.95 | 71.95 |
| TraesCS3D01G252800.1 | Wheat | nucleus | 71.95 | 71.95 |
| KRG93576 | Soybean | cytosol | 68.33 | 68.33 |
| KRH74936 | Soybean | endoplasmic reticulum | 68.33 | 68.02 |
| KRH18448 | Soybean | endoplasmic reticulum | 67.87 | 67.87 |
| HORVU1Hr1G079430.1 | Barley | nucleus | 67.42 | 67.42 |
| KRH70794 | Soybean | endoplasmic reticulum | 67.42 | 67.12 |
| TraesCS1A01G363100.1 | Wheat | nucleus | 65.61 | 65.91 |
| TraesCS1B01G380300.1 | Wheat | cytosol, golgi, nucleus | 65.16 | 65.45 |
| TraesCS1D01G368100.1 | Wheat | cytosol, golgi, nucleus | 65.16 | 65.45 |
| TraesCS1D01G368200.1 | Wheat | cytosol | 57.92 | 64.97 |
| TraesCS1B01G380400.2 | Wheat | nucleus | 57.01 | 63.96 |
| TraesCS3D01G207900.1 | Wheat | cytosol | 63.35 | 63.35 |
| TraesCS3A01G207400.1 | Wheat | cytosol, golgi, peroxisome | 62.9 | 62.9 |
| TraesCS3B01G234600.1 | Wheat | cytosol | 62.9 | 62.9 |
| Os01t0560200-01 | Rice | plasma membrane | 62.44 | 62.44 |
| TraesCS1A01G363200.1 | Wheat | nucleus | 55.66 | 62.44 |
| TraesCS3D01G208300.1 | Wheat | cytosol, golgi, nucleus | 61.54 | 61.54 |
| EES00925 | Sorghum | cytosol | 61.09 | 61.09 |
| Zm00001d011179_P001 | Maize | mitochondrion | 60.63 | 60.63 |
| Zm00001d009421_P001 | Maize | cytosol | 25.79 | 60.0 |
| KRH40042 | Soybean | cytosol | 61.54 | 59.91 |
| HORVU6Hr1G049030.1 | Barley | golgi, plasma membrane | 13.12 | 59.18 |
| GSMUA_Achr1P11680_001 | Banana | cytosol, golgi, plasma membrane | 38.46 | 59.03 |
| Zm00001d043700_P006 | Maize | cytosol | 62.9 | 57.44 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 19.46 | 46.74 |
| Zm00001d029400_P002 | Maize | cytosol | 22.62 | 33.33 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | EntrezGene:100801744 | MapMan:22.7.2.1 | EMBL:ACUP02003543 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_06G196300 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012507 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031902 |
| GO:GO:0042147 | GO:GO:0048280 | InterPro:GOSR2/Membrin/Bos1 | UniProt:I1KCV4 | InterPro:IPR038407 | EnsemblPlants:KRH54584 |
| ProteinID:KRH54584 | ProteinID:KRH54584.1 | ProteinID:KRH54585.1 | PFAM:PF05008 | PFAM:PF12352 | PIRSF:PIRSF028865 |
| PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix |
| UniParc:UPI00023395CD | InterPro:Vesicle_trsprt_v-SNARE_N | InterPro:v-SNARE_N_sf | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:17619583..17622233
Molecular Weight (calculated)
24955.0 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.488
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVFEGYER QYCEQSANLS RQCTAASALD GEQKKQKLSD IKAGLDDADT LIRKMDLEAR SLQPSVKAAL LAKLREYKTD LSNLKSEVKR VTSASVNLTA
101: RDDLLESGRA DTLAASNDQK GRLLMSTERL NQSSDRIKES RKTMLETEDL GEFILRDLHQ QRESLLHAHK TIHGVDDNIS KSKKILSAMS RRMSRNKWIV
201: SSLMTALVLA ILIILYFKLT H
101: RDDLLESGRA DTLAASNDQK GRLLMSTERL NQSSDRIKES RKTMLETEDL GEFILRDLHQ QRESLLHAHK TIHGVDDNIS KSKKILSAMS RRMSRNKWIV
201: SSLMTALVLA ILIILYFKLT H
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.