Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G207900.1 | Wheat | cytosol | 95.92 | 21.27 |
| TraesCS3A01G207400.1 | Wheat | cytosol, golgi, peroxisome | 93.88 | 20.81 |
| TraesCS3B01G234600.1 | Wheat | cytosol | 93.88 | 20.81 |
| TraesCS3D01G208300.1 | Wheat | cytosol, golgi, nucleus | 93.88 | 20.81 |
| Os01t0560200-01 | Rice | plasma membrane | 85.71 | 19.0 |
| EES00925 | Sorghum | cytosol | 73.47 | 16.29 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 63.27 | 14.03 |
| HORVU1Hr1G079430.1 | Barley | nucleus | 61.22 | 13.57 |
| HORVU3Hr1G066580.1 | Barley | cytosol, golgi, nucleus | 61.22 | 13.57 |
| KRH54584 | Soybean | cytosol | 59.18 | 13.12 |
| Zm00001d029400_P002 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G049030.1 | EnsemblPlantsGene:HORVU6Hr1G049030 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR21230 |
| PANTHER:PTHR21230:SF31 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B476387 | UniProt:A0A287U4E2 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr6H:+:298241041..298241450
Molecular Weight (calculated)
5713.3 Da
IEP (calculated)
10.834
GRAVY (calculated)
0.592
Length
49 amino acids
Sequence
(BLAST)
(BLAST)
1: HDVDDNIGKS RKIMGAMVRR MDRNKWVIGF LIALLVLAIL VVLYFKFVH
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.