Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G363100.1 | Wheat | nucleus | 96.83 | 97.27 |
| TraesCS1B01G380300.1 | Wheat | cytosol, golgi, nucleus | 96.38 | 96.82 |
| TraesCS1D01G368100.1 | Wheat | cytosol, golgi, nucleus | 95.48 | 95.91 |
| TraesCS1B01G380400.2 | Wheat | nucleus | 77.83 | 87.31 |
| TraesCS1D01G368200.1 | Wheat | cytosol | 77.38 | 86.8 |
| TraesCS1A01G363200.1 | Wheat | nucleus | 75.11 | 84.26 |
| HORVU3Hr1G066580.1 | Barley | cytosol, golgi, nucleus | 82.81 | 82.81 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 71.04 | 71.04 |
| KRH54584 | Soybean | cytosol | 67.42 | 67.42 |
| HORVU6Hr1G049030.1 | Barley | golgi, plasma membrane | 13.57 | 61.22 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 20.36 | 48.91 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:GOSR2/Membrin/Bos1 | EnsemblPlantsGene:HORVU1Hr1G079430 |
| EnsemblPlants:HORVU1Hr1G079430.1 | InterPro:IPR038407 | UniProt:M0YCV8 | PFAM:PF05008 | PFAM:PF12352 | PIRSF:PIRSF028865 |
| PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix |
| UniParc:UPI0002953E94 | InterPro:Vesicle_trsprt_v-SNARE_N | SEG:seg | InterPro:v-SNARE_N_sf | : | : |
Description
No Description!
Coordinates
chrchr1H:+:523079483..523083676
Molecular Weight (calculated)
24928.9 Da
IEP (calculated)
9.375
GRAVY (calculated)
-0.453
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDVFEGYER QYCEISAALS RKCAAASALD GEKKKQKLSE IQADVQESES LIRRMDLEAR SLQPSVKAGL LAKLREYKSD LNNVKGEIKR VSAPNAQQAT
101: REELLESGMS DTLAASSDQR GRLMMTSERL NQSSDRIRES QRTVFETEEI GVSILQDLHN QRQSLLHAHT TLHGVDDYIG KSKKILASMS KRMDRNKWIV
201: GGIIATLVFA ILFILYFKFA R
101: REELLESGMS DTLAASSDQR GRLMMTSERL NQSSDRIRES QRTVFETEEI GVSILQDLHN QRQSLLHAHT TLHGVDDYIG KSKKILASMS KRMDRNKWIV
201: GGIIATLVFA ILFILYFKFA R
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.