Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G368200.1 | Wheat | cytosol | 94.42 | 94.42 |
| TraesCS1B01G380400.2 | Wheat | nucleus | 93.4 | 93.4 |
| HORVU1Hr1G079430.1 | Barley | nucleus | 84.26 | 75.11 |
| TraesCS1A01G363100.1 | Wheat | nucleus | 81.73 | 73.18 |
| TraesCS3A01G252300.1 | Wheat | nucleus | 72.59 | 64.71 |
| KRH54584 | Soybean | cytosol | 62.44 | 55.66 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 62.44 | 55.66 |
| TraesCS3A01G207400.1 | Wheat | cytosol, golgi, peroxisome | 59.9 | 53.39 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 18.78 | 40.22 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR038407 | PFAM:PF05008 | PFAM:PF12352 |
| PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 |
| EnsemblPlantsGene:TraesCS1A01G363200 | EnsemblPlants:TraesCS1A01G363200.1 | InterPro:Vesicle_trsprt_v-SNARE_N | TIGR:cd15862 | SEG:seg | InterPro:v-SNARE_N_sf |
Description
No Description!
Coordinates
chr1A:-:543948820..543951681
Molecular Weight (calculated)
22043.1 Da
IEP (calculated)
9.050
GRAVY (calculated)
-0.702
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDVFEGYER QYREISAALS RKCAAASALD GEKKQQKLSE IQAHVQESGS LIRKMDSEAQ SLPPTVRAGL LSKLRQYKSD LNNIKSEIKR VSAPNAQQAT
101: REELLDSGMP DSLGASSDQR GRLMMTSERL NQSSDRIRES QITALDTEEI GVSILQNLHN QRETLMHAHK TLHGVDDSIG KSNKILASMS KWNKWFV
101: REELLDSGMP DSLGASSDQR GRLMMTSERL NQSSDRIRES QITALDTEEI GVSILQNLHN QRETLMHAHK TLHGVDDSIG KSNKILASMS KWNKWFV
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.