Factsheet for TraesCS3A01G252300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G283800.1	Wheat	nucleus	100.0	100.0
TraesCS3D01G252800.1	Wheat	nucleus	99.55	99.55
HORVU3Hr1G066580.1	Barley	cytosol, golgi, nucleus	98.19	98.19
EES01350	Sorghum	cytosol	91.86	91.86
Zm00001d011688_P001	Maize	cytosol, golgi, nucleus	91.4	91.4
Os01t0707300-01	Rice	plasma membrane	90.05	90.05
TraesCS1A01G363100.1	Wheat	nucleus	79.64	80.0
VIT_17s0000g06580.t01	Wine grape	extracellular	74.66	74.66
TraesCS1A01G363200.1	Wheat	nucleus	64.71	72.59
KRH54584	Soybean	cytosol	72.4	72.4
TraesCS3A01G207400.1	Wheat	cytosol, golgi, peroxisome	72.4	72.4
GSMUA_Achr1P11700_001	Banana	cytosol, endoplasmic reticulum, peroxisome	20.36	48.91

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3A01G252300	EnsemblPlants:TraesCS3A01G252300.1	InterPro:Vesicle_trsprt_v-SNARE_N	TIGR:cd15862	SEG:seg
InterPro:v-SNARE_N_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:472799301..472803241

Molecular Weight (calculated)

24929.1 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.529

Length

221 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCEESASLS RKCTAASALD GEKKKQRLSE IQSGVQEAES LIRRMDLEAR NTPPSVKAGL LAKLREYKSD LNNLKSELKR ISAPNARQTT
101: KEELLESGMA DTLAVSTDQR GRLMMTTERL NQSTDRIKES RRTMLETEEL GVSILQDLHQ QRQSLLHAHD TLHGVDDNVG KSKKILSAMS KRMDRNKWII
201: GGIISALVVA ILIILYFKLA H

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.