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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • vacuole 2
  • cytosol 2
  • mitochondrion 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, golgi, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:golgi
YLoc:cytosol
 plasma membrane: 28056797
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES01350 Sorghum cytosol 93.67 93.67
Zm00001d011688_P001 Maize cytosol, golgi, nucleus 92.76 92.76
HORVU3Hr1G066580.1 Barley cytosol, golgi, nucleus 90.5 90.5
TraesCS3A01G252300.1 Wheat nucleus 90.05 90.05
TraesCS3B01G283800.1 Wheat nucleus 90.05 90.05
TraesCS3D01G252800.1 Wheat nucleus 90.05 90.05
VIT_17s0000g06580.t01 Wine grape extracellular 76.47 76.47
KRH54584 Soybean cytosol 72.4 72.4
Os01t0560200-01 Rice plasma membrane 68.78 68.78
GSMUA_Achr1P11700_001 Banana cytosol, endoplasmic reticulum, peroxisome 19.91 47.83
Protein Annotations
Gene3D:1.20.5.110Gene3D:1.20.58.400MapMan:22.7.2.1EntrezGene:4327678EMBL:AK059962EMBL:AK104463
ProteinID:BAB86528.1ProteinID:BAB92337.1ProteinID:BAF05935.1ProteinID:BAS73949.1ncoils:CoilProteinID:EEE55273.1
GO:GO:0000149GO:GO:0003674GO:GO:0005484GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005768GO:GO:0005783GO:GO:0005789
GO:GO:0005794GO:GO:0005829GO:GO:0006623GO:GO:0006810GO:GO:0006886GO:GO:0006888
GO:GO:0006891GO:GO:0006896GO:GO:0008150GO:GO:0009987GO:GO:0012507GO:GO:0016020
GO:GO:0016021GO:GO:0016043GO:GO:0016192GO:GO:0031201GO:GO:0031902GO:GO:0042147
GO:GO:0048280GO:GO:0061025InterPro:GOSR2/Membrin/Bos1InterPro:IPR038407EnsemblPlantsGene:Os01g0707300EnsemblPlants:Os01t0707300-01
PFAM:PF05008PFAM:PF12352PIRSF:PIRSF028865PANTHER:PTHR21230PANTHER:PTHR21230:SF31UniProt:Q8S0N4
InterPro:SNARESUPFAM:SSF47661SUPFAM:SSF58038TMHMM:TMhelixUniParc:UPI000009D5EFInterPro:Vesicle_trsprt_v-SNARE_N
RefSeq:XP_015621845.1SEG:segInterPro:v-SNARE_N_sf:::
Description
Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13). (Os01t0707300-01);Similar to vesicle transport v-SNARE 13. (Os01t0707300-02)
Coordinates
chr1:+:29364593..29367878
Molecular Weight (calculated)
24863.1 Da
IEP (calculated)
9.579
GRAVY (calculated)
-0.412
Length
221 amino acids
Sequence
(BLAST)
001: MSEVFEGYER QYCEVSASLF RKCTTASALD GEKKKQKLSE IQSGVEEAES LIRKMDLEAR SLQPSVKAGL LAKLREYKSD LNNLKSELKR ISAPNARQAT
101: REELLESGLA DTLAASTDQR GRLMMTTERL NQSNDKIKES RRTILETEEL GVSILQDLHQ QRQSLLHAHT TLHGVDDNVG KSKKILAAMS KRMDRNKWII
201: GGIIAALVLA ILLILYFKLA Y
Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.