Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 2
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G252300.1 | Wheat | nucleus | 98.19 | 98.19 |
| TraesCS3B01G283800.1 | Wheat | nucleus | 98.19 | 98.19 |
| TraesCS3D01G252800.1 | Wheat | nucleus | 97.74 | 97.74 |
| EES01350 | Sorghum | cytosol | 92.31 | 92.31 |
| Zm00001d011688_P001 | Maize | cytosol, golgi, nucleus | 91.86 | 91.86 |
| Os01t0707300-01 | Rice | plasma membrane | 90.5 | 90.5 |
| HORVU1Hr1G079430.1 | Barley | nucleus | 82.81 | 82.81 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 74.66 | 74.66 |
| KRH54584 | Soybean | cytosol | 71.95 | 71.95 |
| HORVU6Hr1G049030.1 | Barley | golgi, plasma membrane | 13.57 | 61.22 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 20.36 | 48.91 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | EMBL:AK370930 | ncoils:Coil | UniProt:F2E456 |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| InterPro:GOSR2/Membrin/Bos1 | EnsemblPlantsGene:HORVU3Hr1G066580 | EnsemblPlants:HORVU3Hr1G066580.1 | InterPro:IPR038407 | PFAM:PF05008 | PFAM:PF12352 |
| PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 |
| TMHMM:TMhelix | UniParc:UPI0002007B97 | InterPro:Vesicle_trsprt_v-SNARE_N | InterPro:v-SNARE_N_sf | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E456]
Coordinates
chrchr3H:+:506175956..506181302
Molecular Weight (calculated)
25001.2 Da
IEP (calculated)
9.421
GRAVY (calculated)
-0.520
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVFEGYER QYCEESASLS RKCTAASALD GEKKKQRLSE IQSGVQEAES LIRRMDLEAR NMPPSVKAGL LAKLREYKSD LNNLKSELKR ISAPNARQTT
101: REELLESGMA DTLAVSTDQR GRLMMTTERL NQSTDRIKES RRTMLETEEL GVSILQDLHQ QRQSLLHAHD TLHGVDDNVG KSKKILAAMS KRMDRNKWII
201: GGIISTLVVA ILIILYFKLA H
101: REELLESGMA DTLAVSTDQR GRLMMTTERL NQSTDRIKES RRTMLETEEL GVSILQDLHQ QRQSLLHAHD TLHGVDDNVG KSKKILAAMS KRMDRNKWII
201: GGIISTLVVA ILIILYFKLA H
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.