Factsheet for Zm00001d011688_P001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01350	Sorghum	cytosol	98.19	98.19
Os01t0707300-01	Rice	plasma membrane	92.76	92.76
HORVU3Hr1G066580.1	Barley	cytosol, golgi, nucleus	91.86	91.86
TraesCS3A01G252300.1	Wheat	nucleus	91.4	91.4
TraesCS3B01G283800.1	Wheat	nucleus	91.4	91.4
TraesCS3D01G252800.1	Wheat	nucleus	90.95	90.95
Zm00001d009421_P001	Maize	cytosol	38.01	88.42
VIT_17s0000g06580.t01	Wine grape	extracellular	78.28	78.28
KRH54584	Soybean	cytosol	73.76	73.76
Zm00001d043700_P006	Maize	cytosol	80.09	73.14
Zm00001d011179_P001	Maize	mitochondrion	70.59	70.59
Zm00001d029400_P002	Maize	cytosol	31.22	46.0

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100192626	MapMan:22.7.2.1	ProteinID:AQK97743.1	ProteinID:AQK97745.1
UniProt:B4FC18	EMBL:BT034656	ncoils:Coil	EMBL:EU967271	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407
PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE
SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000151E2DC	InterPro:Vesicle_trsprt_v-SNARE_N	EnsemblPlantsGene:Zm00001d011688
EnsemblPlants:Zm00001d011688_P001	EnsemblPlants:Zm00001d011688_T001	SEG:seg	InterPro:v-SNARE_N_sf	:	:

Description

Vesicle transport v-SNARE 12

Coordinates

chr8:+:158788080..158794162

Molecular Weight (calculated)

24876.1 Da

IEP (calculated)

9.654

GRAVY (calculated)

-0.461

Length

221 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCEASASLS RKCTAASALD GERKKQKLSE IQSGVEEAES LIRKMDLEAR SLQPSIKAGL LAKLREYKSD LNNVKSELKR ISAPNARQAT
101: REELLESGMA DTLAVSTDQR GRLMMTTERL NQSTDRIKES RRTMLETEEL GVSILQDLHQ QRQSLLHAHT TLHGVDDNIG KSKKILAAMS KRMDRNKWII
201: GGIITALALA ILFILYFKLA H

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.