Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029400_P002 | Maize | cytosol | 69.47 | 44.0 |
| Zm00001d011688_P001 | Maize | cytosol, golgi, nucleus | 88.42 | 38.01 |
| Zm00001d043700_P006 | Maize | cytosol | 86.32 | 33.88 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 65.26 | 28.05 |
| Zm00001d011179_P001 | Maize | mitochondrion | 64.21 | 27.6 |
| KRH54584 | Soybean | cytosol | 60.0 | 25.79 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 5.26 | 5.43 |
Protein Annotations
| Gene3D:1.20.58.400 | MapMan:22.7.2.1 | UniProt:A0A1D6FJB7 | ProteinID:AQK91854.1 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016192 | InterPro:IPR038407 | PFAM:PF05008 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 | InterPro:SNARE |
| SUPFAM:SSF47661 | UniParc:UPI000221472D | InterPro:Vesicle_trsprt_v-SNARE_N | EnsemblPlantsGene:Zm00001d009421 | EnsemblPlants:Zm00001d009421_P001 | EnsemblPlants:Zm00001d009421_T001 |
| InterPro:v-SNARE_N_sf | : | : | : | : | : |
Description
Vesicle transport v-SNARE 12
Coordinates
chr8:+:63763964..63765287
Molecular Weight (calculated)
10548.7 Da
IEP (calculated)
5.932
GRAVY (calculated)
-0.563
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MVVVGGQEPG ERKKQKLSEI HSDVEEAESL IWKMDLEARS LQPSIKAGLL AKLREYKSDL NNVKSELKRI SAPNARQATR EELLESGMAD TLAVS
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.