Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009421_P001 | Maize | cytosol | 44.0 | 69.47 |
| Zm00001d011688_P001 | Maize | cytosol, golgi, nucleus | 46.0 | 31.22 |
| Zm00001d043700_P006 | Maize | cytosol | 45.33 | 28.1 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 37.33 | 25.34 |
| Zm00001d011179_P001 | Maize | mitochondrion | 37.33 | 25.34 |
| Os01t0560200-01 | Rice | plasma membrane | 36.67 | 24.89 |
| KRH54584 | Soybean | cytosol | 33.33 | 22.62 |
| HORVU6Hr1G049030.1 | Barley | golgi, plasma membrane | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.58.400 | MapMan:22.7.2.1 | UniProt:A0A1D6K4X8 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
| InterPro:IPR038407 | ProteinID:ONL98655.1 | PFAM:PF05008 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 | InterPro:SNARE |
| SUPFAM:SSF47661 | UniParc:UPI000843D127 | InterPro:Vesicle_trsprt_v-SNARE_N | EnsemblPlantsGene:Zm00001d029400 | EnsemblPlants:Zm00001d029400_P002 | EnsemblPlants:Zm00001d029400_T002 |
| InterPro:v-SNARE_N_sf | : | : | : | : | : |
Description
Vesicle transport v-SNARE 12
Coordinates
chr1:-:69009947..69012985
Molecular Weight (calculated)
16906.4 Da
IEP (calculated)
7.408
GRAVY (calculated)
-0.326
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIILKCSKK SKHVNDNNIV ALSNMTMAHF DELEDKTTDY VDLSVQEFAL KQPQCGMAYN YYGNLRLYVV ANKAELASSI FEIDKIQKMD LEARSLQPSI
101: KASLLAKLRE YKSDLNNVKS ELKRISAPNA RQATREELLE SGMADTLAVS
101: KASLLAKLRE YKSDLNNVKS ELKRISAPNA RQATREELLE SGMADTLAVS
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [cytosol,nucleus,golgi]
SUBAcon: [cytosol,nucleus,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.