Factsheet for Zm00001d011179_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00925	Sorghum	cytosol	94.57	94.57
TraesCS3D01G207900.1	Wheat	cytosol	82.81	82.81
TraesCS3A01G207400.1	Wheat	cytosol, golgi, peroxisome	82.35	82.35
TraesCS3B01G234600.1	Wheat	cytosol	81.9	81.9
TraesCS3D01G208300.1	Wheat	cytosol, golgi, nucleus	80.09	80.09
Zm00001d011688_P001	Maize	cytosol, golgi, nucleus	70.59	70.59
VIT_17s0000g06580.t01	Wine grape	extracellular	66.52	66.52
Zm00001d009421_P001	Maize	cytosol	27.6	64.21
KRH54584	Soybean	cytosol	60.63	60.63
Zm00001d043700_P006	Maize	cytosol	63.8	58.26
Zm00001d029400_P002	Maize	cytosol	25.34	37.33

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100191695	MapMan:22.7.2.1	ProteinID:AQK96110.1	UniProt:B6TUE7
EMBL:BT088105	ncoils:Coil	EMBL:EU968612	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	PFAM:PF05008
PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000151E277	InterPro:Vesicle_trsprt_v-SNARE_N	EnsemblPlantsGene:Zm00001d011179	EnsemblPlants:Zm00001d011179_P001
EnsemblPlants:Zm00001d011179_T001	SEG:seg	InterPro:v-SNARE_N_sf	:	:	:

Description

Vesicle transport v-SNARE 12

Coordinates

chr8:+:142099701..142102964

Molecular Weight (calculated)

24901.2 Da

IEP (calculated)

9.715

GRAVY (calculated)

-0.362

Length

221 amino acids

Sequence
(BLAST)

001: MSKVFEGYER QYCEASASLT RKCTAAAALQ GEKLKQKAAE IQSGIDGAEA LIRKMDLEAR NLQPSIRADL LVKIREYKSD LNNLKGALKR VTSINAQQGA
101: REELLESGMA DTLGVSADQR SRLLRATERQ NQTTDRLRDS HRTMLETEEL GVSILHDLSQ QRQSLLHAHD VLDEVDNNVG KSRRTIGGMM RRMDRNKWII
201: GLIIAVLVLA ILVILYFKFV H

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.