Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011179_P001 | Maize | mitochondrion | 94.57 | 94.57 |
| TraesCS3D01G207900.1 | Wheat | cytosol | 82.81 | 82.81 |
| TraesCS3A01G207400.1 | Wheat | cytosol, golgi, peroxisome | 82.35 | 82.35 |
| Os01t0560200-01 | Rice | plasma membrane | 81.9 | 81.9 |
| TraesCS3B01G234600.1 | Wheat | cytosol | 81.9 | 81.9 |
| TraesCS3D01G208300.1 | Wheat | cytosol, golgi, nucleus | 80.54 | 80.54 |
| HORVU6Hr1G049030.1 | Barley | golgi, plasma membrane | 16.29 | 73.47 |
| EES01350 | Sorghum | cytosol | 71.95 | 71.95 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 65.61 | 65.61 |
| KRH54584 | Soybean | cytosol | 61.09 | 61.09 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | EntrezGene:8075021 | UniProt:C5XNN2 | ncoils:Coil |
| EnsemblPlants:EES00925 | ProteinID:EES00925 | ProteinID:EES00925.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0006623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006888 | GO:GO:0006891 | GO:GO:0006896 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0012507 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0031201 | GO:GO:0031902 | GO:GO:0042147 | GO:GO:0048280 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR038407 |
| PFAM:PF05008 | PFAM:PF12352 | PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 | InterPro:SNARE |
| EnsemblPlantsGene:SORBI_3003G190600 | SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix | UniParc:UPI0001A8482B | InterPro:Vesicle_trsprt_v-SNARE_N |
| RefSeq:XP_002455805.1 | SEG:seg | InterPro:v-SNARE_N_sf | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:51197291..51201050
Molecular Weight (calculated)
24760.1 Da
IEP (calculated)
9.893
GRAVY (calculated)
-0.360
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVFEGYER QYCEASASLT RKCTAAAALQ GEKLKQKAAE IQSGIDGAEA LIRKMDLEAR NLQPSIRAGL LAKIREYKSD LNNLKGALKR ITSGNAQQGA
101: REELLESGMA DALGVSADQR SRLLRATERQ NKTTDRLRDS HKTMLETEDL GVSILHDLNQ QRQSLLRAHD VLDEVDNNVG KSRRIIGGMM RRMDRNKWII
201: GLIIAVLVLA ILVILYFKFV H
101: REELLESGMA DALGVSADQR SRLLRATERQ NKTTDRLRDS HKTMLETEDL GVSILHDLNQ QRQSLLRAHD VLDEVDNNVG KSRRIIGGMM RRMDRNKWII
201: GLIIAVLVLA ILVILYFKFV H
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.