Factsheet for TraesCS3D01G208300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G207900.1	Wheat	cytosol	96.83	96.83
TraesCS3B01G234600.1	Wheat	cytosol	96.38	96.38
TraesCS3A01G207400.1	Wheat	cytosol, golgi, peroxisome	95.48	95.48
HORVU6Hr1G049030.1	Barley	golgi, plasma membrane	20.81	93.88
EES00925	Sorghum	cytosol	80.54	80.54
Os01t0560200-01	Rice	plasma membrane	80.54	80.54
Zm00001d011179_P001	Maize	mitochondrion	80.09	80.09
TraesCS3D01G252800.1	Wheat	nucleus	69.23	69.23
VIT_17s0000g06580.t01	Wine grape	extracellular	67.87	67.87
TraesCS1D01G368100.1	Wheat	cytosol, golgi, nucleus	64.71	65.0
KRH54584	Soybean	cytosol	61.54	61.54
TraesCS1D01G368200.1	Wheat	cytosol	54.3	60.91

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016192	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS3D01G208300	EnsemblPlants:TraesCS3D01G208300.1	InterPro:Vesicle_trsprt_v-SNARE_N	TIGR:cd15862	SEG:seg	InterPro:v-SNARE_N_sf

Description

No Description!

Coordinates

chr3D:-:275125737..275128919

Molecular Weight (calculated)

25087.5 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.459

Length

221 amino acids

Sequence
(BLAST)

001: MTDVFQGYER QYCEISASLS RKCTAAASQE GEKLKQKASK IKSSIDGPEA LIRKMDLEAR NLQPSLRAGQ LAKLREYKSD LNNLKGVLKR ITAGNGQQGA
101: REELLESGMA DMLVVSADQR SRLLRTTERQ NQTTDRIRDS HRTMLETEEL GVSIMHDLHQ QRQSLLHAND TLHDVDDNIG KSRKIMGAMV RRMDRNKWII
201: GLLIALLVLA ILVVLYFKFL H

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.