Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G207900.1 | Wheat | cytosol | 99.09 | 99.09 |
| TraesCS3A01G207400.1 | Wheat | cytosol, golgi, peroxisome | 97.74 | 97.74 |
| TraesCS3D01G208300.1 | Wheat | cytosol, golgi, nucleus | 96.38 | 96.38 |
| HORVU6Hr1G049030.1 | Barley | golgi, plasma membrane | 20.81 | 93.88 |
| Os01t0560200-01 | Rice | plasma membrane | 83.26 | 83.26 |
| EES00925 | Sorghum | cytosol | 81.9 | 81.9 |
| Zm00001d011179_P001 | Maize | mitochondrion | 81.9 | 81.9 |
| TraesCS3B01G283800.1 | Wheat | nucleus | 71.49 | 71.49 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 69.68 | 69.68 |
| TraesCS1B01G380300.1 | Wheat | cytosol, golgi, nucleus | 66.06 | 66.36 |
| KRH54584 | Soybean | cytosol | 62.9 | 62.9 |
| TraesCS1B01G380400.2 | Wheat | nucleus | 55.2 | 61.93 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR038407 | PFAM:PF05008 | PFAM:PF12352 | PIRSF:PIRSF028865 |
| PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS3B01G234600 | EnsemblPlants:TraesCS3B01G234600.1 | InterPro:Vesicle_trsprt_v-SNARE_N | TIGR:cd15862 | SEG:seg | InterPro:v-SNARE_N_sf |
Description
No Description!
Coordinates
chr3B:+:367241033..367244479
Molecular Weight (calculated)
24949.2 Da
IEP (calculated)
9.699
GRAVY (calculated)
-0.458
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDVFQGYER QYCEISASLS RKCTAAASQE GEKLKQKASE IKSGIDGAEA LIRKMDLEAR NLQPSVRAGQ LAKLREYKSD LNNLKGTLKR ITAGNGQQGA
101: REELLESGMA DTLVVSADQR SRLLRTTERQ NQTTDRIRDS HRTMLETEEL GVSIMHDLHQ QRQSLLHAND TLHDVDDSIG KSRKIMGAMV RRMDRNKWII
201: GLLIALLVLA ILVVLYFKFV H
101: REELLESGMA DTLVVSADQR SRLLRTTERQ NQTTDRIRDS HRTMLETEEL GVSIMHDLHQ QRQSLLHAND TLHDVDDSIG KSRKIMGAMV RRMDRNKWII
201: GLLIALLVLA ILVVLYFKFV H
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.