Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G368200.1 | Wheat | cytosol | 95.94 | 95.94 |
| TraesCS1A01G363200.1 | Wheat | nucleus | 93.4 | 93.4 |
| HORVU1Hr1G079430.1 | Barley | nucleus | 87.31 | 77.83 |
| TraesCS1B01G380300.1 | Wheat | cytosol, golgi, nucleus | 85.79 | 76.82 |
| TraesCS3B01G283800.1 | Wheat | nucleus | 76.65 | 68.33 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 64.47 | 57.47 |
| KRH54584 | Soybean | cytosol | 63.96 | 57.01 |
| TraesCS3B01G234600.1 | Wheat | cytosol | 61.93 | 55.2 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 18.78 | 40.22 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR038407 | PFAM:PF05008 | PFAM:PF12352 |
| PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 |
| EnsemblPlantsGene:TraesCS1B01G380400 | EnsemblPlants:TraesCS1B01G380400.2 | InterPro:Vesicle_trsprt_v-SNARE_N | TIGR:cd15862 | SEG:seg | InterPro:v-SNARE_N_sf |
Description
No Description!
Coordinates
chr1B:-:613244555..613249716
Molecular Weight (calculated)
22036.2 Da
IEP (calculated)
8.700
GRAVY (calculated)
-0.637
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVFEGYER QYCEISAALS RKCAAASALD GEKKKQKLSE IQADVQESES LIRRMDLEAR SLPPTVKAGL LSKLRQYKSD LNNIKSEIKK ASAPNAQQAT
101: REELLDSGMP DTLGASSDQR GRLMMTSERL NQSSDRIRES QITALDTEEI GVSILQNLHN QRVTLMHAHK TLHGVDDSIG KSNKILASMS KWNKWFV
101: REELLDSGMP DTLGASSDQR GRLMMTSERL NQSSDRIRES QITALDTEEI GVSILQNLHN QRVTLMHAHK TLHGVDDSIG KSNKILASMS KWNKWFV
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.