Factsheet for TraesCS1B01G380300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G368100.1	Wheat	cytosol, golgi, nucleus	98.64	98.64
TraesCS1A01G363100.1	Wheat	nucleus	97.73	97.73
HORVU1Hr1G079430.1	Barley	nucleus	96.82	96.38
TraesCS1B01G380400.2	Wheat	nucleus	76.82	85.79
TraesCS3B01G283800.1	Wheat	nucleus	80.45	80.09
VIT_17s0000g06580.t01	Wine grape	extracellular	69.55	69.23
TraesCS3B01G234600.1	Wheat	cytosol	66.36	66.06
KRH54584	Soybean	cytosol	65.45	65.16
GSMUA_Achr1P11700_001	Banana	cytosol, endoplasmic reticulum, peroxisome	19.55	46.74

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G380300	EnsemblPlants:TraesCS1B01G380300.1	InterPro:Vesicle_trsprt_v-SNARE_N	TIGR:cd15862	SEG:seg
InterPro:v-SNARE_N_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:613233167..613236733

Molecular Weight (calculated)

24677.6 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.413

Length

220 amino acids

Sequence
(BLAST)

001: MSEVFEGYAG QYCEISAALS RKCAAASALD GEKKQQKLSE IQADVQESES LIRRMDLEAR SMQPSVKAGL LAKLREYKSD LNNVKGEIKR LSAPNAQQAT
101: REELLESGMS DTLSASSDQR GRLMMTSERL NQSSDRIRES QRTVFETEEI GVSILQDLHN QRQSLLHAHT TLHGVDDYIG KSKKILASMS KRMDRNKWIV
201: GGIIATLVFA ILFILYFKFA

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.