Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G380300.1 | Wheat | cytosol, golgi, nucleus | 97.73 | 97.73 |
| HORVU1Hr1G079430.1 | Barley | nucleus | 97.27 | 96.83 |
| TraesCS1D01G368100.1 | Wheat | cytosol, golgi, nucleus | 96.82 | 96.82 |
| TraesCS1A01G363200.1 | Wheat | nucleus | 73.18 | 81.73 |
| TraesCS3A01G252300.1 | Wheat | nucleus | 80.0 | 79.64 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 70.0 | 69.68 |
| TraesCS3A01G207400.1 | Wheat | cytosol, golgi, peroxisome | 66.36 | 66.06 |
| KRH54584 | Soybean | cytosol | 65.91 | 65.61 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 20.45 | 48.91 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.400 | MapMan:22.7.2.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016043 | GO:GO:0016192 | InterPro:GOSR2/Membrin/Bos1 | InterPro:IPR038407 | PFAM:PF05008 | PFAM:PF12352 |
| PIRSF:PIRSF028865 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | InterPro:SNARE | SUPFAM:SSF47661 | SUPFAM:SSF58038 |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1A01G363100 | EnsemblPlants:TraesCS1A01G363100.1 | InterPro:Vesicle_trsprt_v-SNARE_N | TIGR:cd15862 | SEG:seg |
| InterPro:v-SNARE_N_sf | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:543929777..543933616
Molecular Weight (calculated)
24650.6 Da
IEP (calculated)
9.057
GRAVY (calculated)
-0.392
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDVFEGYAG QYCEISAALS RKCAAASALD GEKKKQKLSE IQADVQESES LIRRMDLEAR SMQPSVKAGL LAKLREYKSD LNSVKGEIKR LSAPNAQQAT
101: REELLESGMS DTLAASSDQR GRLMMTSERL NQSSDRIRES QRTVFETEEI GVSILQDLHN QRQSLLHAHT TLHGVDDYIG KSKKILASMS KRMDRNKWIV
201: GSIIATLVFA ILFILYFKFA
101: REELLESGMS DTLAASSDQR GRLMMTSERL NQSSDRIRES QRTVFETEEI GVSILQDLHN QRQSLLHAHT TLHGVDDYIG KSKKILASMS KRMDRNKWIV
201: GSIIATLVFA ILFILYFKFA
001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH
Arabidopsis Description
VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.