Factsheet for Os01t0560200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G049030.1	Barley	golgi, plasma membrane	19.0	85.71
TraesCS3B01G234600.1	Wheat	cytosol	83.26	83.26
TraesCS3D01G207900.1	Wheat	cytosol	83.26	83.26
EES00925	Sorghum	cytosol	81.9	81.9
TraesCS3A01G207400.1	Wheat	cytosol, golgi, peroxisome	81.9	81.9
TraesCS3D01G208300.1	Wheat	cytosol, golgi, nucleus	80.54	80.54
Os01t0707300-01	Rice	plasma membrane	68.78	68.78
VIT_17s0000g06580.t01	Wine grape	extracellular	66.97	66.97
KRH54584	Soybean	cytosol	62.44	62.44
Zm00001d029400_P002	Maize	cytosol	24.89	36.67

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	EntrezGene:4324687	EMBL:AK102003	ProteinID:BAB85407.1
ProteinID:BAF05262.1	ProteinID:BAS72719.1	ncoils:Coil	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005829	GO:GO:0006623
GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006891	GO:GO:0006896	GO:GO:0008150
GO:GO:0009987	GO:GO:0012507	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	GO:GO:0031902	GO:GO:0042147	GO:GO:0048280	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1
InterPro:IPR038407	EnsemblPlantsGene:Os01g0560200	EnsemblPlants:Os01t0560200-01	PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865
PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	UniProt:Q8S9S2	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000009CA25	InterPro:Vesicle_trsprt_v-SNARE_N	RefSeq:XP_015622901.1	SEG:seg	InterPro:v-SNARE_N_sf

Description

Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13). (Os01t0560200-01)

Coordinates

chr1:+:21275618..21278757

Molecular Weight (calculated)

24936.3 Da

IEP (calculated)

9.992

GRAVY (calculated)

-0.407

Length

221 amino acids

Sequence
(BLAST)

001: MADVFEGYER QYCEISASLA RKCTAASALQ GEKLKQKASE IKSGIDGAEA LIKKMDLEAR NQQPSVRAGL LAKLREYKSD LNNLKGTLKR VTTGNAQQGS
101: REELLESGMA ETLGVSADQK SRLLRITEKQ NKTTDRIRDS HRTMLETEDL GVSLLQDLHQ QRERLIHAHG TLDNVDDNIG KSRRIMGAMV RRMDRNKWII
201: GFIIALLVLV ILVILYFKFV H

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.