Factsheet for Zm00001d043700_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009421_P001	Maize	cytosol	33.88	86.32
Zm00001d011688_P001	Maize	cytosol, golgi, nucleus	73.14	80.09
VIT_17s0000g06580.t01	Wine grape	extracellular	58.68	64.25
Zm00001d011179_P001	Maize	mitochondrion	58.26	63.8
KRH54584	Soybean	cytosol	57.44	62.9
Zm00001d029400_P002	Maize	cytosol	28.1	45.33

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	EntrezGene:100280807	MapMan:22.7.2.1	UniProt:A0A1D6NEE8	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR038407	ProteinID:ONM38857.1	PFAM:PF05008
PFAM:PF12352	PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI00084457EC	InterPro:Vesicle_trsprt_v-SNARE_N	EnsemblPlantsGene:Zm00001d043700	EnsemblPlants:Zm00001d043700_P006	EnsemblPlants:Zm00001d043700_T006
InterPro:v-SNARE_N_sf	:	:	:	:	:

Description

Vesicle transport v-SNARE 12

Coordinates

chr3:-:207765077..207770834

Molecular Weight (calculated)

27138.8 Da

IEP (calculated)

7.312

GRAVY (calculated)

-0.145

Length

242 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCEASASLS RKCTAASALD GEKKKQKLSE IQSGVEEAES LIRKMDLEAR NLQPSIKAGL LAKLREYKSD LNNVKSELKR ISAPNARQAT
101: REELLESGMA DTLAVSTDQR GRLMMTTERL NQSTDRIKES RRTMLETEEL GVSILQDLHQ QRQSLLHAHT TVCTCLNSST YYIDLISGFL IFSGCKAAII
201: LANRTSITAL IVNCPCSVLV LFIAISAWIL FYAEHFFIKI EC

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.