Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P35750_001 | Banana | cytosol | 70.83 | 46.15 |
| GSMUA_Achr4P08630_001 | Banana | cytosol, golgi, nucleus | 70.14 | 45.7 |
| VIT_17s0000g06580.t01 | Wine grape | extracellular | 63.19 | 41.18 |
| KRH54584 | Soybean | cytosol | 59.03 | 38.46 |
| GSMUA_Achr3P32270_001 | Banana | endoplasmic reticulum, extracellular | 14.58 | 15.56 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 4.86 | 7.61 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P11680_001 | EnsemblPlants:GSMUA_Achr1T11680_001 | EnsemblPlantsGene:GSMUA_Achr1G11680_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:SNARE | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF31 |
| SEG:seg | SUPFAM:SSF47661 | TMHMM:TMhelix | UniParc:UPI000296973D | UniProt:M0RZ27 | MapMan:22.7.2.1 |
Description
Putative Vesicle transport v-SNARE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr1G11680_001]
Coordinates
chr1:+:8922159..8928584
Molecular Weight (calculated)
16052.5 Da
IEP (calculated)
9.912
GRAVY (calculated)
-0.206
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEVFDGYER QYSEISASLS RKCTSAALLD GDSKNESRSQ KLGAELKARL LAKFREYKPD IHNLKSEFKR ITIPNPSQAA REELLKPGMA DTLALHGGDD
101: NISKSKRILI AISSRMDSNK WIIGGIIVAL VLAIFLILYF KLGH
101: NISKSKRILI AISSRMDSNK WIIGGIIVAL VLAIFLILYF KLGH
001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.