Factsheet for GSMUA_Achr6P35750_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08630_001	Banana	cytosol, golgi, nucleus	87.33	87.33
VIT_17s0000g06580.t01	Wine grape	extracellular	81.45	81.45
KRH54584	Soybean	cytosol	76.02	76.02
GSMUA_Achr1P11680_001	Banana	cytosol, golgi, plasma membrane	46.15	70.83
GSMUA_Achr1P11700_001	Banana	cytosol, endoplasmic reticulum, peroxisome	20.81	50.0
GSMUA_Achr3P32270_001	Banana	endoplasmic reticulum, extracellular	22.62	37.04

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSMUA_Achr6G35750_001
EnsemblPlants:GSMUA_Achr6P35750_001	EnsemblPlants:GSMUA_Achr6T35750_001	InterPro:IPR038407	UniProt:M0TD18	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF31	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000294A983	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:

Description

Vesicle transport v-SNARE 12 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35750_001]

Coordinates

chr6:+:33878275..33883250

Molecular Weight (calculated)

25016.3 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.489

Length

221 amino acids

Sequence
(BLAST)

001: MSEVFDGYER QYCEISASLS RKCTSAAHLD GEKKKQKVSE IKAGLDDAEN LIRKMDLEAR SLQPSVKAGL LAKLREYKSD LNNLKSELKR ITTPNPTQAS
101: REELLESGKA DMIAVSADQR GRLLMSTERL NQSTDRIKEG RRTMLETEEL GVSILQDLHQ QRQSLLHAHN TLHGVDDNIS KSRKILTAMS RRMDRNKWII
201: GGIMVALVLA ILVILYFKLT H

Best Arabidopsis Sequence Match ( AT1G26670.1 )
(BLAST)

001: MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS
101: SREELMESGM ADLHAVSADQ RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI DKSKKVLTAM SRRMTRNKWI
201: ITSVIVALVL AIILIISYKL SH

Arabidopsis Description

VTI12VTI1B [Source:UniProtKB/TrEMBL;Acc:A0A178W140]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.