Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 4
- extracellular 4
- endoplasmic reticulum 4
- plasma membrane 3
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P08630_001 | Banana | cytosol, golgi, nucleus | 38.52 | 23.53 |
| GSMUA_Achr6P35750_001 | Banana | cytosol | 37.04 | 22.62 |
| GSMUA_Achr1P11700_001 | Banana | cytosol, endoplasmic reticulum, peroxisome | 14.81 | 21.74 |
| GSMUA_Achr1P11680_001 | Banana | cytosol, golgi, plasma membrane | 15.56 | 14.58 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P32270_001 | EnsemblPlants:GSMUA_Achr3T32270_001 | EnsemblPlantsGene:GSMUA_Achr3G32270_001 | Gene3D:1.20.5.110 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 | PFAM:PF12352 | SEG:seg | SUPFAM:SSF58038 |
| TMHMM:TMhelix | UniParc:UPI0002955033 | UniProt:M0SJP1 | MapMan:22.7.2.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G32270_001]
Coordinates
chr3:+:30203499..30206377
Molecular Weight (calculated)
15403.1 Da
IEP (calculated)
9.379
GRAVY (calculated)
0.323
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MPENLWSATI SLISISVPIS ILPLFFKDHI LFRHCFCFLI QSVLRIPGVF PWLIIDWLKE SRTILGAETL GVSTRQDLHQ QHQSLLHAYN ALHGVADNIG
101: KSRKFPTGMS KRMDRSKWAI NSIDIVLVLD NLLIL
101: KSRKFPTGMS KRMDRSKWAI NSIDIVLVLD NLLIL
001: MEYGSFTVVL YAVDGYFLST FCSFQVKKMD LEARNLPPNV KSSLLVKLRE YKSDLNNFKT EVKRITSGNL NATARDELLE AGMADTLTAS ADQRSRLMMS
101: TDHLGRTTDR IKDSRRTILE TEELGVSILQ DLHGQRQSLL RAHETLHGVD DNVGKSKKIL TTMTRRMNRN KWTIGAIITV LVLAIIFILY FKLTR
101: TDHLGRTTDR IKDSRRTILE TEELGVSILQ DLHGQRQSLL RAHETLHGVD DNVGKSKKIL TTMTRRMNRN KWTIGAIITV LVLAIIFILY FKLTR
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.