Factsheet for GSMUA_Achr4P08630_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35750_001	Banana	cytosol	87.33	87.33
VIT_17s0000g06580.t01	Wine grape	extracellular	81.45	81.45
KRH54584	Soybean	cytosol	73.3	73.3
GSMUA_Achr1P11680_001	Banana	cytosol, golgi, plasma membrane	45.7	70.14
GSMUA_Achr1P11700_001	Banana	cytosol, endoplasmic reticulum, peroxisome	20.36	48.91
GSMUA_Achr3P32270_001	Banana	endoplasmic reticulum, extracellular	23.53	38.52

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSMUA_Achr4G08630_001
EnsemblPlants:GSMUA_Achr4P08630_001	EnsemblPlants:GSMUA_Achr4T08630_001	InterPro:IPR038407	UniProt:M0SM80	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI0002961820	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:

Description

Vesicle transport v-SNARE 13 [Source:GMGC_GENE;Acc:GSMUA_Achr4G08630_001]

Coordinates

chr4:+:6330159..6333445

Molecular Weight (calculated)

24987.4 Da

IEP (calculated)

9.641

GRAVY (calculated)

-0.401

Length

221 amino acids

Sequence
(BLAST)

001: MSEVFEGYER QYCEISAALS RKCTSAALLD GEQKKQKVSE IKSGVDDAES LIRKMDLEAR SLQPSVKAGL LAKLREYKSD LNNLKSELKK ITTVNPNQAA
101: REDLLESGMA DTLMVSADQR GRLMMSTERL NQSTERVKES RRTILETEEL GVSILQDLHQ QRQSLLHAHN TLHGVDDHIG KSRKILTAMS KRMDRNKWII
201: GGIIVALVLA IVLILYFKLR H

Best Arabidopsis Sequence Match ( AT3G29100.3 )
(BLAST)

001: MSQGFERYER QYCEISANLS KKCTSAIALD GEQKKQNLSE IKSGVEEAEA LVKKMDLEAR NLPPNVKSSL LVKLREYKSD LNNFKTEVKR ITSGNLNATA
101: RDELLEAGMA DTLTASADQR SRLMMSTDHL GRTTDRIKDS RRTILETEEL GVSILQDLHG QRQSLLRAHE TLHGVDDNVG KSKKILTTMT RRMNRNKWTI
201: GAIITVLVLA IIFILYFKLT R

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.