Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- nucleus 1
- mitochondrion 2
- cytosol 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH14588 | Soybean | endoplasmic reticulum | 98.63 | 98.63 |
CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 84.47 | 84.47 |
Bra040067.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 84.47 | 84.47 |
CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 84.47 | 84.09 |
CDX69781 | Canola | plasma membrane | 83.56 | 82.81 |
GSMUA_Achr6P35140_001 | Banana | plasma membrane | 83.11 | 82.73 |
CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 83.11 | 82.73 |
CDX97084 | Canola | plasma membrane | 82.19 | 81.45 |
AT4G32150.1 | Thale cress | golgi, plasma membrane | 81.28 | 81.28 |
Bra008987.1-P | Field mustard | mitochondrion | 81.74 | 81.0 |
GSMUA_Achr9P09180_001 | Banana | endoplasmic reticulum, plasma membrane | 81.28 | 80.91 |
AT2G25340.1 | Thale cress | endoplasmic reticulum, plasma membrane | 79.91 | 79.91 |
AT5G11150.2 | Thale cress | golgi, plasma membrane | 80.37 | 77.88 |
OQU75937 | Sorghum | plasma membrane | 74.89 | 74.21 |
Os06t0174400-01 | Rice | plasma membrane | 73.52 | 72.85 |
TraesCS7B01G037300.1 | Wheat | plasma membrane, plastid | 72.6 | 71.95 |
TraesCS7A01G136300.1 | Wheat | plasma membrane, plastid | 72.6 | 71.95 |
TraesCS7D01G136300.1 | Wheat | endoplasmic reticulum, plasma membrane | 72.15 | 71.49 |
Os02t0803600-01 | Rice | plasma membrane | 69.86 | 67.7 |
KRH03646 | Soybean | plasma membrane | 68.49 | 66.67 |
TraesCS6A01G371800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 70.78 | 66.52 |
KRH20159 | Soybean | plastid | 68.04 | 66.52 |
EES05972 | Sorghum | cytosol | 68.95 | 66.23 |
TraesCS6D01G355800.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 70.32 | 66.09 |
Zm00001d018408_P001 | Maize | cytosol | 68.04 | 65.93 |
TraesCS6B01G409400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 69.86 | 65.67 |
Zm00001d037483_P002 | Maize | plasma membrane | 75.34 | 64.96 |
HORVU7Hr1G028250.1 | Barley | peroxisome, plasma membrane | 70.78 | 63.01 |
KRH25265 | Soybean | plasma membrane | 53.88 | 53.64 |
KRH30399 | Soybean | endoplasmic reticulum | 53.42 | 53.18 |
Bra011325.1-P | Field mustard | endoplasmic reticulum | 79.0 | 47.4 |
KRH36720 | Soybean | endoplasmic reticulum | 39.73 | 39.37 |
KRH11727 | Soybean | cytosol | 39.73 | 39.37 |
KRH46773 | Soybean | endoplasmic reticulum | 39.27 | 38.91 |
KRG99810 | Soybean | endoplasmic reticulum | 38.81 | 38.46 |
KRG90219 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 37.44 | 37.1 |
KRH50475 | Soybean | endoplasmic reticulum | 37.44 | 36.44 |
KRG89410 | Soybean | cytosol | 37.44 | 36.44 |
KRH02246 | Soybean | cytosol | 34.7 | 34.39 |
KRH50864 | Soybean | cytosol | 34.25 | 33.94 |
KRH12042 | Soybean | cytosol | 33.79 | 33.48 |
KRH33448 | Soybean | extracellular, golgi | 9.59 | 33.33 |
KRH37118 | Soybean | cytosol | 33.33 | 32.74 |
KRH36005 | Soybean | endoplasmic reticulum | 34.7 | 31.93 |
KRH33450 | Soybean | cytosol | 25.57 | 31.82 |
KRG90750 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 31.96 | 27.67 |
KRG99807 | Soybean | cytosol | 26.94 | 26.7 |
KRH57708 | Soybean | plastid | 10.5 | 19.49 |
Protein Annotations
Gene3D:1.20.5.110 | EntrezGene:100803941 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | EMBL:ACUP02001280 | EnsemblPlantsGene:GLYMA_02G279100 |
GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 |
GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
GO:GO:0031201 | UniProt:I1JIW7 | InterPro:IPR001388 | InterPro:IPR010908 | EnsemblPlants:KRH73537 | ProteinID:KRH73537 |
ProteinID:KRH73537.1 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 |
ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF104 | SMART:SM01270 |
SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin | TMHMM:TMhelix | UniParc:UPI0001FBDD86 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:46140030..46143569
Molecular Weight (calculated)
24939.2 Da
IEP (calculated)
9.762
GRAVY (calculated)
-0.105
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILYALVGR GSVVLAEFSG TTTNASAIAR QILEKIPGNN DTHVSYSQDR YIFHVKRTDG LTVLCMADDT AGRRIPFAFL EDIHQKFVRT YGRAVHSAQP
101: YGMNEEFSRV LSQQMEYYSS DPNADRINRL KGEMSQVRNV MIENIDKVLD RGDRLELLVD KTANMQGNTF RFRKQARRFR STVWWRNVKL TIALIVVLLV
201: IVYVVLAFVC HGPALPSCF
101: YGMNEEFSRV LSQQMEYYSS DPNADRINRL KGEMSQVRNV MIENIDKVLD RGDRLELLVD KTANMQGNTF RFRKQARRFR STVWWRNVKL TIALIVVLLV
201: IVYVVLAFVC HGPALPSCF
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
Arabidopsis Description
ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.