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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • peroxisome 1
  • nucleus 1
  • mitochondrion 2
  • cytosol 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:plastid
MultiLoc:peroxisome
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH14588 Soybean endoplasmic reticulum 98.63 98.63
CDY61387 Canola endoplasmic reticulum, plasma membrane 84.47 84.47
Bra040067.1-P Field mustard endoplasmic reticulum, plasma membrane 84.47 84.47
CDX75224 Canola endoplasmic reticulum, plasma membrane 84.47 84.09
CDX69781 Canola plasma membrane 83.56 82.81
GSMUA_Achr6P35140_001 Banana plasma membrane 83.11 82.73
CDX68821 Canola endoplasmic reticulum, plasma membrane 83.11 82.73
CDX97084 Canola plasma membrane 82.19 81.45
AT4G32150.1 Thale cress golgi, plasma membrane 81.28 81.28
Bra008987.1-P Field mustard mitochondrion 81.74 81.0
GSMUA_Achr9P09180_001 Banana endoplasmic reticulum, plasma membrane 81.28 80.91
AT2G25340.1 Thale cress endoplasmic reticulum, plasma membrane 79.91 79.91
AT5G11150.2 Thale cress golgi, plasma membrane 80.37 77.88
OQU75937 Sorghum plasma membrane 74.89 74.21
Os06t0174400-01 Rice plasma membrane 73.52 72.85
TraesCS7B01G037300.1 Wheat plasma membrane, plastid 72.6 71.95
TraesCS7A01G136300.1 Wheat plasma membrane, plastid 72.6 71.95
TraesCS7D01G136300.1 Wheat endoplasmic reticulum, plasma membrane 72.15 71.49
Os02t0803600-01 Rice plasma membrane 69.86 67.7
KRH03646 Soybean plasma membrane 68.49 66.67
TraesCS6A01G371800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 70.78 66.52
KRH20159 Soybean plastid 68.04 66.52
EES05972 Sorghum cytosol 68.95 66.23
TraesCS6D01G355800.1 Wheat cytosol, mitochondrion, peroxisome, plastid 70.32 66.09
Zm00001d018408_P001 Maize cytosol 68.04 65.93
TraesCS6B01G409400.1 Wheat cytosol, mitochondrion, peroxisome, plastid 69.86 65.67
Zm00001d037483_P002 Maize plasma membrane 75.34 64.96
HORVU7Hr1G028250.1 Barley peroxisome, plasma membrane 70.78 63.01
KRH25265 Soybean plasma membrane 53.88 53.64
KRH30399 Soybean endoplasmic reticulum 53.42 53.18
Bra011325.1-P Field mustard endoplasmic reticulum 79.0 47.4
KRH36720 Soybean endoplasmic reticulum 39.73 39.37
KRH11727 Soybean cytosol 39.73 39.37
KRH46773 Soybean endoplasmic reticulum 39.27 38.91
KRG99810 Soybean endoplasmic reticulum 38.81 38.46
KRG90219 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 37.44 37.1
KRH50475 Soybean endoplasmic reticulum 37.44 36.44
KRG89410 Soybean cytosol 37.44 36.44
KRH02246 Soybean cytosol 34.7 34.39
KRH50864 Soybean cytosol 34.25 33.94
KRH12042 Soybean cytosol 33.79 33.48
KRH33448 Soybean extracellular, golgi 9.59 33.33
KRH37118 Soybean cytosol 33.33 32.74
KRH36005 Soybean endoplasmic reticulum 34.7 31.93
KRH33450 Soybean cytosol 25.57 31.82
KRG90750 Soybean cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 31.96 27.67
KRG99807 Soybean cytosol 26.94 26.7
KRH57708 Soybean plastid 10.5 19.49
Protein Annotations
Gene3D:1.20.5.110EntrezGene:100803941MapMan:22.7.5.1Gene3D:3.30.450.50EMBL:ACUP02001280EnsemblPlantsGene:GLYMA_02G279100
GO:GO:0000149GO:GO:0003674GO:GO:0005484GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006810GO:GO:0006887GO:GO:0006906
GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016192
GO:GO:0031201UniProt:I1JIW7InterPro:IPR001388InterPro:IPR010908EnsemblPlants:KRH73537ProteinID:KRH73537
ProteinID:KRH73537.1InterPro:Longin-like_dom_sfInterPro:Longin_domPFAM:PF00957PFAM:PF13774PRINTS:PR00219
ScanProsite:PS00417PFscan:PS50859PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF104SMART:SM01270
SUPFAM:SSF58038SUPFAM:SSF64356InterPro:SynaptobrevinTMHMM:TMhelixUniParc:UPI0001FBDD86SEG:seg
Description
hypothetical protein
Coordinates
chr2:-:46140030..46143569
Molecular Weight (calculated)
24939.2 Da
IEP (calculated)
9.762
GRAVY (calculated)
-0.105
Length
219 amino acids
Sequence
(BLAST)
001: MGILYALVGR GSVVLAEFSG TTTNASAIAR QILEKIPGNN DTHVSYSQDR YIFHVKRTDG LTVLCMADDT AGRRIPFAFL EDIHQKFVRT YGRAVHSAQP
101: YGMNEEFSRV LSQQMEYYSS DPNADRINRL KGEMSQVRNV MIENIDKVLD RGDRLELLVD KTANMQGNTF RFRKQARRFR STVWWRNVKL TIALIVVLLV
201: IVYVVLAFVC HGPALPSCF
Best Arabidopsis Sequence Match ( AT5G11150.1 )
(BLAST)
001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K
Arabidopsis Description
ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.