Factsheet for Os06t0174400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 2
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0254900-01
Os02t0702800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Os01t0254900-01	AT5G46860.1	24556609
AT4G32150.1	Os02t0702800-01	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75937	Sorghum	plasma membrane	93.21	93.21
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	89.14	89.14
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	89.14	89.14
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	88.69	88.69
Zm00001d037483_P002	Maize	plasma membrane	92.31	80.31
Os02t0803600-01	Rice	plasma membrane	81.45	79.65
GSMUA_Achr6P35140_001	Banana	plasma membrane	78.28	78.64
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	87.33	78.46
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	77.83	78.18
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	74.66	75.0
PGSC0003DMT400067225	Potato	mitochondrion	74.21	74.55
KRH73537	Soybean	endoplasmic reticulum	72.85	73.52
CDY61387	Canola	endoplasmic reticulum, plasma membrane	72.85	73.52
AT4G32150.1	Thale cress	golgi, plasma membrane	72.85	73.52
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	72.85	73.52
KRH14588	Soybean	endoplasmic reticulum	72.4	73.06
VIT_04s0008g05650.t01	Wine grape	extracellular	72.4	72.73
CDX75224	Canola	endoplasmic reticulum, plasma membrane	71.95	72.27
CDX68821	Canola	endoplasmic reticulum, plasma membrane	71.49	71.82
CDX69781	Canola	plasma membrane	70.59	70.59
CDX97084	Canola	plasma membrane	70.14	70.14
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	69.23	69.86
Bra008987.1-P	Field mustard	mitochondrion	69.23	69.23
AT5G11150.2	Thale cress	golgi, plasma membrane	68.33	66.81
KRH03646	Soybean	plasma membrane	65.61	64.44
KRH20159	Soybean	plastid	64.25	63.39
Os10t0154000-01	Rice	plasma membrane	54.75	53.54
Bra011325.1-P	Field mustard	endoplasmic reticulum	66.52	40.27
Os12t0639800-00	Rice	plasma membrane	37.56	37.9
Os07t0194000-01	Rice	plasma membrane	37.56	37.73
Os03t0803000-01	Rice	plasma membrane	36.2	36.36
Os03t0165800-01	Rice	plasma membrane	33.03	32.74
Os07t0249200-01	Rice	cytosol	34.84	31.05
Os08t0558600-01	Rice	extracellular	32.58	29.88

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4340278	EMBL:AK065311	ProteinID:BAA95814.1
ProteinID:BAF18860.1	ProteinID:BAS96403.1	ProteinID:EEE65193.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	EnsemblPlantsGene:Os06g0174400	EnsemblPlants:Os06t0174400-01	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104
UniProt:Q9LWK1	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI000009F65F	RefSeq:XP_015641118.1	:	:	:	:

Description

VESICLE-ASSOCIATED MEMBRANE PROTEIN 7111Similar to Vesicle-associated membrane protein 712 (AtVAMP712). (Os06t0174400-01)

Coordinates

chr6:-:3773690..3776480

Molecular Weight (calculated)

24971.3 Da

IEP (calculated)

9.954

GRAVY (calculated)

-0.048

Length

221 amino acids

Sequence
(BLAST)

001: MAILYAVVAR GTVVLAEHSA AATNAGAVAR QVLERLPGGG ADSHVSYTQD RYVFHAKRTD GITALCMADE AAGRRIPFAF LEDIHGRFVK TYGRAALTSL
101: AYGMNDEFSR VLSQQMDYYS NDPNADRINR MRGEISQVRT VMIDNIDKVL ERGDRLDMLV DKTANMQGNT IRFKRQARRF RNTTWWRNVK LTIALIFLLT
201: VIIYVVLVFM CHGFTLPTCI R

Best Arabidopsis Sequence Match ( AT5G11150.1 )
(BLAST)

001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K

Arabidopsis Description

ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.