Factsheet for Os12t0639800-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 4
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24150	Sorghum	cytosol	79.45	75.98
TraesCS5D01G003800.1	Wheat	cytosol	79.0	74.89
Os07t0194000-01	Rice	plasma membrane	74.43	74.09
TraesCS5A01G003100.1	Wheat	cytosol	77.63	73.28
Os03t0803000-01	Rice	plasma membrane	73.06	72.73
Os03t0165800-01	Rice	plasma membrane	61.19	60.09
Os07t0249200-01	Rice	cytosol	55.71	49.19
Os08t0558600-01	Rice	extracellular	53.88	48.96
Os06t0174400-01	Rice	plasma membrane	37.9	37.56
Os10t0154000-01	Rice	plasma membrane	36.99	35.84
Os02t0803600-01	Rice	plasma membrane	35.16	34.07

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4352920	UniProt:A0A0P0YCQ1
ProteinID:BAT18293.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
EnsemblPlantsGene:Os12g0639800	EnsemblPlants:Os12t0639800-00	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF99	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0001C7BC87	RefSeq:XP_015619880.1	SEG:seg	:

Description

Similar to CDS_VAMP. (Os12t0639800-00)

Coordinates

chr12:+:27438961..27441793

Molecular Weight (calculated)

24486.0 Da

IEP (calculated)

8.983

GRAVY (calculated)

-0.052

Length

219 amino acids

Sequence
(BLAST)

001: MAESKLIYAM VARGTVVLAE HTAYAGNFRD IAAQCLQKLP AGDNRLTYTC DAHTFNFLIH QGYAYCVVAT ESSGRQIPLA LLDMIKEDFN KRYAGGKAAT
101: AAANSLSRDF GPRLGEQMKY CMDHPEEVSK LAKVKAQVSE VKGIMMENID KAIDRGQQID VLVSRTEQLH DQAADFRQQG TRVRRKMWYQ NMKIKLIVLG
201: IIIALILIII LSVCHGFKC

Best Arabidopsis Sequence Match ( AT1G04760.2 )
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFKGNFTS VAAQCLQKLP SSNNKFTYNC DGHTFNYLAD NGFTYCVVVI ESAGRQIPMA FLERVKEDFN KRYGGGKAST
101: AKANSLNKEF GSKLKEHMQY CADHPEEISK LSKVKAQVTE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TKMKRKLWFE NMKIKLIVFG
201: IIVALILIII LSVCHGFKCT

Arabidopsis Description

VAMP726Putative vesicle-associated membrane protein 726 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAS5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.