Factsheet for Os03t0803000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 19502382
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0194000-01	Rice	plasma membrane	96.36	96.36
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	95.91	95.91
TraesCS5B01G457700.1	Wheat	vacuole	92.73	91.89
TraesCS5D01G459900.1	Wheat	vacuole	92.73	91.89
TraesCS5A01G449900.1	Wheat	unclear	92.73	91.48
HORVU5Hr1G107510.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	92.73	91.48
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	90.45	90.87
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	90.0	90.41
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	90.0	90.41
VIT_05s0136g00290.t01	Wine grape	extracellular	90.0	90.0
GSMUA_Achr9P11030_001	Banana	cytosol	89.55	89.95
GSMUA_Achr7P01760_001	Banana	plasma membrane	89.09	89.5
CDX89793	Canola	endoplasmic reticulum	87.27	87.27
Bra015345.1-P	Field mustard	endoplasmic reticulum	87.27	87.27
CDY18254	Canola	endoplasmic reticulum	87.27	87.27
CDX86608	Canola	endoplasmic reticulum	86.82	87.21
CDY15521	Canola	endoplasmic reticulum	86.36	86.76
Bra022893.1-P	Field mustard	cytosol	85.91	85.91
CDX84731	Canola	cytosol	85.91	85.91
Bra032493.1-P	Field mustard	cytosol	85.45	85.45
Bra005568.1-P	Field mustard	cytosol	85.45	85.45
CDY12188	Canola	cytosol	85.45	85.45
CDY06150	Canola	cytosol	85.0	85.0
Bra030588.1-P	Field mustard	endoplasmic reticulum	84.55	84.93
CDY10053	Canola	endoplasmic reticulum	84.55	84.55
CDY19450	Canola	cytosol, extracellular	85.45	84.3
CDY17139	Canola	cytosol, extracellular	85.0	83.86
Bra005523.1-P	Field mustard	cytosol, extracellular	85.0	83.86
CDY19154	Canola	cytosol	83.64	83.64
CDX84702	Canola	endoplasmic reticulum	84.09	83.33
CDX79510	Canola	endoplasmic reticulum	84.09	83.33
Bra022926.1-P	Field mustard	endoplasmic reticulum	84.09	83.33
Bra021804.1-P	Field mustard	cytosol	83.18	83.18
CDY48531	Canola	cytosol	81.82	81.82
Zm00001d013055_P002	Maize	extracellular, plasma membrane	87.27	81.36
CDX79466	Canola	endoplasmic reticulum	62.73	78.41
CDY19156	Canola	cytosol	50.45	77.08
CDY59643	Canola	extracellular	25.91	77.03
CDY59642	Canola	endoplasmic reticulum	61.36	75.84
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	75.0	75.34
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	74.55	74.89
Os12t0639800-00	Rice	plasma membrane	72.73	73.06
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	70.91	70.91
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	53.18	70.06
Os03t0165800-01	Rice	plasma membrane	70.0	69.06
CDX79465	Canola	extracellular	26.36	67.44
CDY23767	Canola	extracellular	28.18	57.94
Os08t0558600-01	Rice	extracellular	61.36	56.02
Os07t0249200-01	Rice	cytosol	61.36	54.44
AT3G24890.2	Thale cress	cytosol	28.18	50.0
TraesCS3B01G193500.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	77.73	38.17
Os10t0154000-01	Rice	plasma membrane	37.27	36.28
Os06t0174400-01	Rice	plasma membrane	36.36	36.2
Os02t0803600-01	Rice	plasma membrane	35.0	34.07
PGSC0003DMT400043452	Potato	cytosol	53.64	31.98
Solyc12g098170.1.1	Tomato	cytosol	17.27	12.46

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4334472	ProteinID:AAO72389.1
ProteinID:ABF99408.1	ProteinID:BAF13520.1	ProteinID:BAS86911.1	ProteinID:EEE60123.1	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	EnsemblPlantsGene:Os03g0803000	EnsemblPlants:Os03t0803000-01	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF92	UniProt:Q84SZ1	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0000056100	RefSeq:XP_015632621.1	SEG:seg	:	:

Description

Synaptobrevin domain containing protein. (Os03t0803000-01)

Coordinates

chr3:+:33507134..33510352

Molecular Weight (calculated)

24741.3 Da

IEP (calculated)

8.984

GRAVY (calculated)

-0.031

Length

220 amino acids

Sequence
(BLAST)

001: MGQQSLIYAF VARGTVILAE YTEFTGNFTT IASQCLMKLP ASNNKFTYNC DGHTFNYLVE DGFTYCVVAV ESVGRQIPIA FLDRVKDDFT KRYAGGKAAT
101: AAANSLNRDF GSKLKEHMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQAG TQVRRKMWLQ NMKIKLIVLG
201: IIIALILIII LSVCHGFKCK

Best Arabidopsis Sequence Match ( AT1G04750.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC

Arabidopsis Description

VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.