Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37751 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 93.41 | 71.23 |
| Bra021828.1-P | Field mustard | endoplasmic reticulum, extracellular | 91.02 | 69.41 |
| CDY19156 | Canola | cytosol | 59.28 | 68.75 |
| CDX79466 | Canola | endoplasmic reticulum | 70.66 | 67.05 |
| CDY59642 | Canola | endoplasmic reticulum | 71.26 | 66.85 |
| CDX84702 | Canola | endoplasmic reticulum | 79.64 | 59.91 |
| CDY17139 | Canola | cytosol, extracellular | 79.64 | 59.64 |
| CDX79510 | Canola | endoplasmic reticulum | 79.04 | 59.46 |
| CDY19450 | Canola | cytosol, extracellular | 79.04 | 59.19 |
| CDY18254 | Canola | endoplasmic reticulum | 77.25 | 58.64 |
| CDX89793 | Canola | endoplasmic reticulum | 77.25 | 58.64 |
| CDX86608 | Canola | endoplasmic reticulum | 76.65 | 58.45 |
| CDY15521 | Canola | endoplasmic reticulum | 76.65 | 58.45 |
| CDY06150 | Canola | cytosol | 75.45 | 57.27 |
| CDY10053 | Canola | endoplasmic reticulum | 75.45 | 57.27 |
| CDY48527 | Canola | cytosol | 24.55 | 56.94 |
| CDX84731 | Canola | cytosol | 73.65 | 55.91 |
| CDY12188 | Canola | cytosol | 73.05 | 55.45 |
| GSMUA_Achr7P01760_001 | Banana | plasma membrane | 71.26 | 54.34 |
| Os07t0194000-01 | Rice | plasma membrane | 71.26 | 54.09 |
| AT2G33110.1 | Thale cress | extracellular, golgi | 70.06 | 53.92 |
| GSMUA_Achr9P25440_001 | Banana | cytosol, vacuole | 70.66 | 53.88 |
| VIT_05s0136g00290.t01 | Wine grape | extracellular | 70.66 | 53.64 |
| GSMUA_Achr4P22260_001 | Banana | cytosol, extracellular | 70.06 | 53.42 |
| Os03t0803000-01 | Rice | plasma membrane | 70.06 | 53.18 |
| CDY19154 | Canola | cytosol | 70.06 | 53.18 |
| GSMUA_Achr8P15290_001 | Banana | cytosol, endoplasmic reticulum | 69.46 | 52.97 |
| OQU90815 | Sorghum | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 69.46 | 52.73 |
| CDY48531 | Canola | cytosol | 69.46 | 52.73 |
| EER96027 | Sorghum | extracellular | 70.06 | 52.7 |
| Zm00001d007767_P001 | Maize | extracellular | 70.06 | 52.7 |
| GSMUA_Achr2P17740_001 | Banana | cytosol | 68.86 | 52.51 |
| GSMUA_Achr9P11030_001 | Banana | cytosol | 67.66 | 51.6 |
| TraesCS5D01G459900.1 | Wheat | vacuole | 68.26 | 51.35 |
| TraesCS5B01G457700.1 | Wheat | vacuole | 68.26 | 51.35 |
| TraesCS5A01G449900.1 | Wheat | unclear | 68.26 | 51.12 |
| HORVU5Hr1G107510.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 68.26 | 51.12 |
| Zm00001d013055_P002 | Maize | extracellular, plasma membrane | 62.87 | 44.49 |
| CDY22900 | Canola | cytosol, plasma membrane, plastid | 58.68 | 44.14 |
| CDY44179 | Canola | cytosol | 58.68 | 44.14 |
| Zm00001d019091_P002 | Maize | vacuole | 68.86 | 44.06 |
| CDY22757 | Canola | cytosol | 52.1 | 43.07 |
| GSMUA_Achr8P03260_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 56.29 | 42.73 |
| CDX67594 | Canola | cytosol | 47.9 | 33.2 |
| CDX76153 | Canola | cytosol | 47.9 | 33.06 |
| CDY07551 | Canola | cytosol | 47.31 | 32.92 |
| CDX78228 | Canola | cytosol, plasma membrane | 46.71 | 32.5 |
| CDX73490 | Canola | plasma membrane | 46.11 | 31.95 |
| CDY13199 | Canola | plasma membrane | 37.13 | 31.16 |
| CDX70999 | Canola | endoplasmic reticulum | 35.33 | 26.7 |
| CDX88799 | Canola | plasma membrane | 34.73 | 26.24 |
| CDY61387 | Canola | endoplasmic reticulum, plasma membrane | 34.13 | 26.03 |
| CDX75224 | Canola | endoplasmic reticulum, plasma membrane | 34.13 | 25.91 |
| CDX68821 | Canola | endoplasmic reticulum, plasma membrane | 33.53 | 25.45 |
| CDX69781 | Canola | plasma membrane | 33.53 | 25.34 |
| CDY09133 | Canola | endoplasmic reticulum | 32.93 | 24.89 |
| CDX97084 | Canola | plasma membrane | 32.34 | 24.43 |
| PGSC0003DMT400043452 | Potato | cytosol | 51.5 | 23.31 |
| TraesCS3B01G193500.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.89 | 21.21 |
| CDY23767 | Canola | extracellular | 7.19 | 11.21 |
| CDX79465 | Canola | extracellular | 5.39 | 10.47 |
| CDY59643 | Canola | extracellular | 4.19 | 9.46 |
| Solyc12g098170.1.1 | Tomato | cytosol | 10.78 | 5.9 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:13.4.2.3.4 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:A0A078GGL4 | UniProt:A0A078GGL4 |
| EnsemblPlants:CDY23768 | ProteinID:CDY23768 | ProteinID:CDY23768.1 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00024115001 | InterPro:IPR001388 | InterPro:IPR010908 |
| InterPro:Longin-like_dom_sf | InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 | PRINTS:PR00219 | PFscan:PS50859 |
| PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF92 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | InterPro:Synaptobrevin |
| TMHMM:TMhelix | UniParc:UPI0004EEB432 | SEG:seg | : | : | : |
Description
BnaC04g43540DBnaC04g43540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGL4]
Coordinates
chrLK032148:+:341945..343565
Molecular Weight (calculated)
19012.4 Da
IEP (calculated)
9.509
GRAVY (calculated)
-0.032
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MYFYYSVNFL ISYCVVAVDS AGREIPMAFL ERVKEDFNRR YGGGKAATAQ PNSLNKEFGS KLKGHMQYCM DHPDEISKLA KVRAQVSEVK GVLIENIDKL
101: YDRGVKIENL VEKTADLRSQ ADVYRTKGDQ IKKKMWFQNM KIKLIFLAII IALILIIILS VCGGFNC
101: YDRGVKIENL VEKTADLRSQ ADVYRTKGDQ IKKKMWFQNM KIKLIFLAII IALILIIILS VCGGFNC
001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE DGFTYCVVAV DSAGRQIPMS FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTTG TQMRRKMWLQ NMKIKLIVLA
201: IIIALILIIV LSVCHGFKC
Arabidopsis Description
VAMP721Putative vesicle-associated membrane protein, synaptobrevin 7B [Source:UniProtKB/TrEMBL;Acc:Q681L9]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.