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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 3
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d007767_P001 Maize extracellular 100.0 100.0
Os07t0194000-01 Rice plasma membrane 97.75 98.64
OQU90815 Sorghum cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 95.5 96.36
GSMUA_Achr8P15290_001 Banana cytosol, endoplasmic reticulum 91.89 93.15
GSMUA_Achr4P22260_001 Banana cytosol, extracellular 90.99 92.24
GSMUA_Achr9P25440_001 Banana cytosol, vacuole 90.99 92.24
GSMUA_Achr9P11030_001 Banana cytosol 90.54 91.78
VIT_05s0136g00290.t01 Wine grape extracellular 90.09 90.91
GSMUA_Achr7P01760_001 Banana plasma membrane 89.19 90.41
Bra015345.1-P Field mustard endoplasmic reticulum 86.94 87.73
Bra022893.1-P Field mustard cytosol 86.94 87.73
CDY18254 Canola endoplasmic reticulum 86.94 87.73
CDX89793 Canola endoplasmic reticulum 86.94 87.73
CDX84731 Canola cytosol 86.94 87.73
CDX86608 Canola endoplasmic reticulum 86.49 87.67
CDY12188 Canola cytosol 86.49 87.27
Bra005568.1-P Field mustard cytosol 86.49 87.27
CDY15521 Canola endoplasmic reticulum 86.04 87.21
Bra032493.1-P Field mustard cytosol 85.14 85.91
CDY06150 Canola cytosol 84.68 85.45
CDY19154 Canola cytosol 84.68 85.45
Bra030588.1-P Field mustard endoplasmic reticulum 84.23 85.39
CDY17139 Canola cytosol, extracellular 85.59 85.2
Bra005523.1-P Field mustard cytosol, extracellular 85.59 85.2
CDY10053 Canola endoplasmic reticulum 84.23 85.0
Bra021804.1-P Field mustard cytosol 84.23 85.0
CDY19450 Canola cytosol, extracellular 85.14 84.75
CDX84702 Canola endoplasmic reticulum 84.68 84.68
CDX79510 Canola endoplasmic reticulum 84.68 84.68
Bra022926.1-P Field mustard endoplasmic reticulum 84.68 84.68
Zm00001d019091_P002 Maize vacuole 98.65 83.91
CDY48531 Canola cytosol 82.88 83.64
CDX79466 Canola endoplasmic reticulum 63.96 80.68
CDY19156 Canola cytosol 50.9 78.47
CDY59643 Canola extracellular 26.13 78.38
CDY59642 Canola endoplasmic reticulum 62.16 77.53
Bra021828.1-P Field mustard endoplasmic reticulum, extracellular 75.23 76.26
CDY37751 Canola endoplasmic reticulum, extracellular, plasma membrane 74.77 75.8
KXG40114 Sorghum cytosol, vacuole 72.52 73.18
GSMUA_Achr8P03260_001 Banana cytosol, mitochondrion, plasma membrane, plastid 70.72 71.36
CDY23768 Canola endoplasmic reticulum, extracellular, plasma membrane 52.7 70.06
CDX79465 Canola extracellular 26.58 68.6
KXG24150 Sorghum cytosol 67.57 65.5
CDY23767 Canola extracellular 28.38 58.88
KXG25383 Sorghum plastid 61.71 56.85
KXG34786 Sorghum cytosol 61.71 55.02
AT3G24890.2 Thale cress cytosol 27.93 50.0
EES09956 Sorghum cytosol, mitochondrion, nucleus, plastid 18.47 49.4
OQU75937 Sorghum plasma membrane 38.74 38.91
EES13179 Sorghum endoplasmic reticulum, plasma membrane 38.29 38.29
EES05972 Sorghum cytosol 37.39 36.4
PGSC0003DMT400043452 Potato cytosol 53.15 31.98
Solyc12g098170.1.1 Tomato cytosol 16.67 12.13
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50EntrezGene:8063672UniProt:C5XCJ4
ncoils:CoilEnsemblPlants:EER96027ProteinID:EER96027ProteinID:EER96027.1GO:GO:0000149GO:GO:0003674
GO:GO:0005484GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006810GO:GO:0006887GO:GO:0006906GO:GO:0008150GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016192GO:GO:0031201InterPro:IPR001388
InterPro:IPR010908InterPro:Longin-like_dom_sfInterPro:Longin_domPFAM:PF00957PFAM:PF13774PRINTS:PR00219
ScanProsite:PS00417PFscan:PS50859PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF92SMART:SM01270
EnsemblPlantsGene:SORBI_3002G068300SUPFAM:SSF58038SUPFAM:SSF64356unigene:Sbi.14374InterPro:SynaptobrevinTMHMM:TMhelix
UniParc:UPI00017B74E0RefSeq:XP_002459506.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:+:6780683..6784525
Molecular Weight (calculated)
24881.4 Da
IEP (calculated)
9.181
GRAVY (calculated)
-0.085
Length
222 amino acids
Sequence
(BLAST)
001: MGQQSLIYAF VARGTVVLAE YTEFTGNFTT IAAQCLQKLP ASNNKFTYNC DGHTFNYLVE DGFTYCVVAV ESVGRQIPIA FLDRVKEDFT KKYGGGKAAT
101: AAANSLNREF GSKLKEHMQY CVDHPEEVSK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKVRRKMWLQ NMKIKLIVLG
201: IIIALILIII LSVCHGFKCG SK
Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)
001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
Arabidopsis Description
VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.