Factsheet for Os07t0194000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

plasma membrane: 19502382
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96027	Sorghum	extracellular	98.64	97.75
Zm00001d007767_P001	Maize	extracellular	98.64	97.75
Os03t0803000-01	Rice	plasma membrane	96.36	96.36
GSMUA_Achr4P22260_001	Banana	cytosol, extracellular	92.73	93.15
GSMUA_Achr8P15290_001	Banana	cytosol, endoplasmic reticulum	92.73	93.15
GSMUA_Achr9P25440_001	Banana	cytosol, vacuole	92.73	93.15
GSMUA_Achr9P11030_001	Banana	cytosol	92.27	92.69
VIT_05s0136g00290.t01	Wine grape	extracellular	91.82	91.82
GSMUA_Achr7P01760_001	Banana	plasma membrane	90.91	91.32
CDX89793	Canola	endoplasmic reticulum	88.64	88.64
CDY18254	Canola	endoplasmic reticulum	88.64	88.64
CDX84731	Canola	cytosol	88.64	88.64
Bra015345.1-P	Field mustard	endoplasmic reticulum	88.64	88.64
Bra022893.1-P	Field mustard	cytosol	88.64	88.64
CDX86608	Canola	endoplasmic reticulum	88.18	88.58
Bra005568.1-P	Field mustard	cytosol	88.18	88.18
CDY12188	Canola	cytosol	88.18	88.18
CDY15521	Canola	endoplasmic reticulum	87.73	88.13
Bra032493.1-P	Field mustard	cytosol	86.82	86.82
CDY06150	Canola	cytosol	86.36	86.36
CDY19154	Canola	cytosol	86.36	86.36
Bra030588.1-P	Field mustard	endoplasmic reticulum	85.91	86.3
CDY10053	Canola	endoplasmic reticulum	85.91	85.91
Bra021804.1-P	Field mustard	cytosol	85.91	85.91
Bra005523.1-P	Field mustard	cytosol, extracellular	86.82	85.65
CDY17139	Canola	cytosol, extracellular	86.82	85.65
CDY19450	Canola	cytosol, extracellular	86.36	85.2
Bra022926.1-P	Field mustard	endoplasmic reticulum	85.91	85.14
CDX84702	Canola	endoplasmic reticulum	85.91	85.14
CDX79510	Canola	endoplasmic reticulum	85.91	85.14
CDY48531	Canola	cytosol	84.55	84.55
Zm00001d019091_P002	Maize	vacuole	97.27	81.99
CDX79466	Canola	endoplasmic reticulum	65.45	81.82
CDY19156	Canola	cytosol	52.27	79.86
CDY59642	Canola	endoplasmic reticulum	63.64	78.65
CDY59643	Canola	extracellular	26.36	78.38
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	76.82	77.17
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	76.36	76.71
Os12t0639800-00	Rice	plasma membrane	74.09	74.43
GSMUA_Achr8P03260_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	72.27	72.27
Os03t0165800-01	Rice	plasma membrane	72.27	71.3
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.09	71.26
CDX79465	Canola	extracellular	26.82	68.6
CDY23767	Canola	extracellular	28.64	58.88
Os08t0558600-01	Rice	extracellular	63.64	58.09
Os07t0249200-01	Rice	cytosol	63.64	56.45
AT3G24890.2	Thale cress	cytosol	28.64	50.81
Os10t0154000-01	Rice	plasma membrane	38.64	37.61
Os06t0174400-01	Rice	plasma membrane	37.73	37.56
Os02t0803600-01	Rice	plasma membrane	36.36	35.4
PGSC0003DMT400043452	Potato	cytosol	53.64	31.98
Solyc12g098170.1.1	Tomato	cytosol	16.82	12.13

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4342638	EMBL:AJ549240
EMBL:AK060910	EMBL:AK099182	EMBL:AK104653	ProteinID:BAD30158.1	ProteinID:BAF21023.1	ProteinID:BAT00452.1
ncoils:Coil	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
EnsemblPlantsGene:Os07g0194000	EnsemblPlants:Os07t0194000-01	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417
PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	UniProt:Q69WS1	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI00003FE78C	RefSeq:XP_015647709.1
SEG:seg	:	:	:	:	:

Description

Similar to Vesicle-associated membrane protein 725 (AtVAMP725). (Os07t0194000-01)

Coordinates

chr7:+:5095716..5099498

Molecular Weight (calculated)

24779.3 Da

IEP (calculated)

9.186

GRAVY (calculated)

-0.081

Length

220 amino acids

Sequence
(BLAST)

001: MGQQSLIYAF VARGTVVLAE YTEFTGNFTT IAAQCLQKLP ASNNKFTYNC DGHTFNYLVE DGFTYCVVAV ESVGRQIPIA FLDRVKEDFT KRYGGGKAAT
101: AAANSLNREF GSKLKEHMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKVRRKMWLQ NMKIKLIVLG
201: IIIALILIII LSVCHGFKCK

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.