Factsheet for Os02t0803600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0254900-01
Os02t0702800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Os01t0254900-01	AT5G46860.1	24556609
AT4G32150.1	Os02t0702800-01	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05972	Sorghum	cytosol	84.96	84.21
Zm00001d018408_P001	Maize	cytosol	82.3	82.3
Os06t0174400-01	Rice	plasma membrane	79.65	81.45
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	81.86	79.4
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	81.42	78.97
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	80.97	78.54
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	72.12	74.09
GSMUA_Achr6P35140_001	Banana	plasma membrane	71.24	73.18
VIT_04s0008g05650.t01	Wine grape	extracellular	69.47	71.36
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	68.58	70.78
CDY61387	Canola	endoplasmic reticulum, plasma membrane	68.58	70.78
AT4G32150.1	Thale cress	golgi, plasma membrane	68.14	70.32
CDX75224	Canola	endoplasmic reticulum, plasma membrane	68.14	70.0
CDX68821	Canola	endoplasmic reticulum, plasma membrane	68.14	70.0
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	68.14	70.0
KRH73537	Soybean	endoplasmic reticulum	67.7	69.86
PGSC0003DMT400067225	Potato	mitochondrion	67.7	69.55
KRH14588	Soybean	endoplasmic reticulum	67.26	69.41
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	65.93	68.04
CDX69781	Canola	plasma membrane	65.04	66.52
CDX97084	Canola	plasma membrane	64.6	66.06
Bra008987.1-P	Field mustard	mitochondrion	63.72	65.16
KRH20159	Soybean	plastid	63.27	63.84
KRH03646	Soybean	plasma membrane	63.27	63.56
AT5G11150.2	Thale cress	golgi, plasma membrane	62.83	62.83
Os10t0154000-01	Rice	plasma membrane	50.88	50.88
Bra011325.1-P	Field mustard	endoplasmic reticulum	62.83	38.9
Os07t0194000-01	Rice	plasma membrane	35.4	36.36
Os12t0639800-00	Rice	plasma membrane	34.07	35.16
Os03t0803000-01	Rice	plasma membrane	34.07	35.0
Os03t0165800-01	Rice	plasma membrane	32.3	32.74
Os08t0558600-01	Rice	extracellular	32.3	30.29
Os07t0249200-01	Rice	cytosol	32.74	29.84

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EntrezGene:4331049	EMBL:AK064750	ProteinID:BAD36041.1
ProteinID:BAF10341.1	ProteinID:BAS81441.1	ProteinID:EEE57998.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908
InterPro:Longin-like_dom_sf	InterPro:Longin_dom	EnsemblPlantsGene:Os02g0803600	EnsemblPlants:Os02t0803600-01	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104
UniProt:Q69SJ1	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI000040396C	RefSeq:XP_015625152.1	SEG:seg	:	:	:

Description

VESICLE-ASSOCIATED MEMBRANE PROTEIN 7112Longin domain containing protein. (Os02t0803600-01)

Coordinates

chr2:+:34263983..34265763

Molecular Weight (calculated)

25248.6 Da

IEP (calculated)

8.883

GRAVY (calculated)

-0.072

Length

226 amino acids

Sequence
(BLAST)

001: MGRIQYAAVA RGAVVMAEHG DAAFPNAGAV ARQILDRLSA GDGGGGGDCN ISYTQDLHVF HVKRTDGVTA LCMADDAAGR RIPFAFLEDI HGRFVKTYGR
101: AALTALAYAM NDEFSRVLGQ QMDYYSNDPN ADRISRMRGE MDQVRNVMID NIDKVLERGD RLELLVDKTA TMQGNTMRFK RQARRFRNTV WWRNVKLTAA
201: SVFILLVIIY IVLVYMCHGF TLPSCI

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.