CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 4
nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74445
CDX74451
CDX77702
CDX95233
CDY30250
CDY33485
CDY37005
CDY37158
CDY43620

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	CDX74445	AT5G39510.1	24556609
AT4G32150.1	CDX74451	AT5G39510.1	24556609
AT4G32150.1	CDX95233	AT5G39510.1	24556609
AT4G32150.1	CDY30250	AT5G39510.1	24556609
AT4G32150.1	CDY37005	AT5G39510.1	24556609
AT4G32150.1	CDX77702	AT5G46860.1	24556609
AT4G32150.1	CDY33485	AT5G46860.1	24556609
AT4G32150.1	CDY37158	AT5G46860.1	24556609
AT4G32150.1	CDY43620	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	100.0	100.0
CDX75224	Canola	endoplasmic reticulum, plasma membrane	97.72	97.27
AT4G32150.1	Thale cress	golgi, plasma membrane	96.35	96.35
CDX68821	Canola	endoplasmic reticulum, plasma membrane	96.35	95.91
VIT_04s0008g05650.t01	Wine grape	extracellular	85.39	85.0
CDX69781	Canola	plasma membrane	85.39	84.62
KRH73537	Soybean	endoplasmic reticulum	84.47	84.47
KRH14588	Soybean	endoplasmic reticulum	84.02	84.02
CDX97084	Canola	plasma membrane	84.02	83.26
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	82.65	82.27
PGSC0003DMT400067225	Potato	mitochondrion	82.65	82.27
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	80.82	80.45
GSMUA_Achr6P35140_001	Banana	plasma membrane	79.91	79.55
OQU75937	Sorghum	plasma membrane	76.71	76.02
Os06t0174400-01	Rice	plasma membrane	73.52	72.85
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	72.6	71.95
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	72.6	71.95
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	72.15	71.49
Os02t0803600-01	Rice	plasma membrane	70.78	68.58
Zm00001d037483_P002	Maize	plasma membrane	77.17	66.54
EES05972	Sorghum	cytosol	68.95	66.23
KRH03646	Soybean	plasma membrane	67.12	65.33
KRH20159	Soybean	plastid	66.67	65.18
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.95	64.81
Zm00001d018408_P001	Maize	cytosol	66.67	64.6
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.49	64.38
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.04	63.95
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	70.78	63.01
CDX88799	Canola	plasma membrane	55.71	55.2
CDX70999	Canola	endoplasmic reticulum	55.25	54.75
CDY09133	Canola	endoplasmic reticulum	54.79	54.3
CDX86608	Canola	endoplasmic reticulum	40.64	40.64
CDY15521	Canola	endoplasmic reticulum	40.64	40.64
CDY18254	Canola	endoplasmic reticulum	40.18	40.0
CDX89793	Canola	endoplasmic reticulum	40.18	40.0
CDY06150	Canola	cytosol	39.73	39.55
CDX79466	Canola	endoplasmic reticulum	31.51	39.2
CDY12188	Canola	cytosol	39.27	39.09
CDX79510	Canola	endoplasmic reticulum	39.27	38.74
CDY10053	Canola	endoplasmic reticulum	38.81	38.64
CDY19450	Canola	cytosol, extracellular	39.27	38.56
CDY17139	Canola	cytosol, extracellular	39.27	38.56
CDX84702	Canola	endoplasmic reticulum	38.81	38.29
CDX84731	Canola	cytosol	37.9	37.73
CDY37751	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.99	36.99
CDY19154	Canola	cytosol	36.99	36.82
CDY59642	Canola	endoplasmic reticulum	29.68	36.52
CDY48531	Canola	cytosol	36.53	36.36
CDY19156	Canola	cytosol	23.29	35.42
CDY13199	Canola	plasma membrane	31.96	35.18
CDY48527	Canola	cytosol	11.42	34.72
CDY44179	Canola	cytosol	35.16	34.68
CDY22900	Canola	cytosol, plasma membrane, plastid	34.7	34.23
CDY23768	Canola	endoplasmic reticulum, extracellular, plasma membrane	26.03	34.13
CDX76153	Canola	cytosol	36.99	33.47
CDX73490	Canola	plasma membrane	36.53	33.2
CDX78228	Canola	cytosol, plasma membrane	36.07	32.92
CDY07551	Canola	cytosol	36.07	32.92
CDY59643	Canola	extracellular	10.96	32.43
CDX67594	Canola	cytosol	35.62	32.37
CDY23767	Canola	extracellular	13.7	28.04
CDX79465	Canola	extracellular	10.96	27.91
CDY22757	Canola	cytosol	24.2	26.24

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:A0A078J902	UniProt:A0A078J902	EnsemblPlants:CDY61387
ProteinID:CDY61387	ProteinID:CDY61387.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00033770001	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
SignalP:SignalP-noTM	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002546B35	SEG:seg	:

Description

BnaA08g30600DBnaA08g30600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J902]

Coordinates

chrLK033992:-:1388..3033

Molecular Weight (calculated)

25130.5 Da

IEP (calculated)

9.594

GRAVY (calculated)

-0.094

Length

219 amino acids

Sequence
(BLAST)

001: MAILYALVAR GTVVLAEFTA TSTNASTIAK QILEKVPGNN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTAQA
101: YAMNEEFSRV LSQQIEYYSN DPNADRINRI KGEMNQVRNV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR STVWWRNCKL TFLLILLLLV
201: IIYIAVAFVC HGPTLPSCI

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.